miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30724 5' -57.3 NC_006552.1 + 20693 0.65 0.651435
Target:  5'- gGCGCCGGCaguccugugccGCCCGCCaucaguuccuuGAUCuucGCu -3'
miRNA:   3'- aCGUGGUCG-----------UGGGCGGgu---------CUAGuu-CG- -5'
30724 5' -57.3 NC_006552.1 + 5757 0.66 0.642763
Target:  5'- gGCgACCAGCACgCCGaucagccccaCCCAGuugaucugcgCAAGCc -3'
miRNA:   3'- aCG-UGGUCGUG-GGC----------GGGUCua--------GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 21602 0.66 0.642763
Target:  5'- aUGCACCAGCgcGCCCugGCCgAuGUCcAGUu -3'
miRNA:   3'- -ACGUGGUCG--UGGG--CGGgUcUAGuUCG- -5'
30724 5' -57.3 NC_006552.1 + 60813 0.66 0.642763
Target:  5'- cGCGCgCAuCACCUGCCCcuacggCGAGCc -3'
miRNA:   3'- aCGUG-GUcGUGGGCGGGucua--GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 12617 0.66 0.642763
Target:  5'- aUGuCGCCGGCcguagUCUGCCCGGcgCuGGCu -3'
miRNA:   3'- -AC-GUGGUCGu----GGGCGGGUCuaGuUCG- -5'
30724 5' -57.3 NC_006552.1 + 58699 0.66 0.631915
Target:  5'- uUGCAUCGGCACa---CCuGGUCAAGUu -3'
miRNA:   3'- -ACGUGGUCGUGggcgGGuCUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 44370 0.66 0.631915
Target:  5'- aGUGCCAGCAgCCGgUCGGAggguccagUCAgcAGCc -3'
miRNA:   3'- aCGUGGUCGUgGGCgGGUCU--------AGU--UCG- -5'
30724 5' -57.3 NC_006552.1 + 51257 0.66 0.631915
Target:  5'- cUGCGCCAGCuuuccCCCGCuccuaCCAGcccCGAGg -3'
miRNA:   3'- -ACGUGGUCGu----GGGCG-----GGUCua-GUUCg -5'
30724 5' -57.3 NC_006552.1 + 26174 0.66 0.621067
Target:  5'- cGCgAUCAGCagacGCCCGCgCCAGuaggcCAGGUg -3'
miRNA:   3'- aCG-UGGUCG----UGGGCG-GGUCua---GUUCG- -5'
30724 5' -57.3 NC_006552.1 + 9536 0.66 0.621067
Target:  5'- cGCGCCGGCcaauuGCCUGaucuaCCCAGGaCAGGa -3'
miRNA:   3'- aCGUGGUCG-----UGGGC-----GGGUCUaGUUCg -5'
30724 5' -57.3 NC_006552.1 + 16437 0.66 0.619983
Target:  5'- cGC-CCAGU-CCCGCCCcagcgccAGGUUuuGCa -3'
miRNA:   3'- aCGuGGUCGuGGGCGGG-------UCUAGuuCG- -5'
30724 5' -57.3 NC_006552.1 + 19793 0.66 0.610229
Target:  5'- uUGUACU-GCACCuCGCUCAGGUU-GGCc -3'
miRNA:   3'- -ACGUGGuCGUGG-GCGGGUCUAGuUCG- -5'
30724 5' -57.3 NC_006552.1 + 63806 0.66 0.610229
Target:  5'- gUGCGCUAGCuucggCGCCCAGGcCAgccAGCc -3'
miRNA:   3'- -ACGUGGUCGugg--GCGGGUCUaGU---UCG- -5'
30724 5' -57.3 NC_006552.1 + 42268 0.66 0.599409
Target:  5'- gGCugCu--GCCUGCCCcugagcguGAUCAGGCg -3'
miRNA:   3'- aCGugGucgUGGGCGGGu-------CUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 40586 0.66 0.599409
Target:  5'- cGUACCAcGCACgCUgGUCCGGGUCGauGGUg -3'
miRNA:   3'- aCGUGGU-CGUG-GG-CGGGUCUAGU--UCG- -5'
30724 5' -57.3 NC_006552.1 + 56354 0.66 0.596168
Target:  5'- gGCGCgCAGUAUCCGCCCGcucuaacgccacccGc-CGAGCg -3'
miRNA:   3'- aCGUG-GUCGUGGGCGGGU--------------CuaGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 39954 0.66 0.596168
Target:  5'- gGCGUCAGCACCCucgcugcauccauuGCUCuuGUCGGGCu -3'
miRNA:   3'- aCGUGGUCGUGGG--------------CGGGucUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 22073 0.67 0.588617
Target:  5'- aUGCGCgCGGCAUCCaGCaCCAGGgugUAcGCa -3'
miRNA:   3'- -ACGUG-GUCGUGGG-CG-GGUCUa--GUuCG- -5'
30724 5' -57.3 NC_006552.1 + 56587 0.67 0.588617
Target:  5'- aGCACCucGCGCCCcaccacaCCUAcAUCGAGCc -3'
miRNA:   3'- aCGUGGu-CGUGGGc------GGGUcUAGUUCG- -5'
30724 5' -57.3 NC_006552.1 + 49097 0.67 0.577859
Target:  5'- gUGcCGCCGGCACCgcUGCCCcacGUCAgccgcGGCg -3'
miRNA:   3'- -AC-GUGGUCGUGG--GCGGGuc-UAGU-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.