miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 30088 0.66 0.724187
Target:  5'- gGGUAGCAGGCUGGCcaGCCuGGuccACGa -3'
miRNA:   3'- -UCGUCGUCCGGUCG--CGG-CUuuaUGCg -5'
30757 3' -55.9 NC_006552.1 + 41152 0.66 0.724187
Target:  5'- cGCAGCGcuGGUCGcCGuuGAAcaGCGCa -3'
miRNA:   3'- uCGUCGU--CCGGUcGCggCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 62960 0.66 0.723129
Target:  5'- cGC-GCAcgaacuGGCCGGCGCCGuucuucugccggcGGAccUGCGCc -3'
miRNA:   3'- uCGuCGU------CCGGUCGCGGC-------------UUU--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 16808 0.66 0.723129
Target:  5'- cAGguGCcaacgcuGGaGCCAGCGCCcGA---ACGCc -3'
miRNA:   3'- -UCguCG-------UC-CGGUCGCGG-CUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 25213 0.66 0.713561
Target:  5'- uGGuCAGCA-GCgCGGCGCCGuug-ACGUu -3'
miRNA:   3'- -UC-GUCGUcCG-GUCGCGGCuuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 27371 0.66 0.713561
Target:  5'- gAGcCGGCAGaCCAGCagGCCGAAcuGUuuGCg -3'
miRNA:   3'- -UC-GUCGUCcGGUCG--CGGCUU--UAugCG- -5'
30757 3' -55.9 NC_006552.1 + 17704 0.66 0.702856
Target:  5'- ---uGUAGaGCCGcGCGCUGAuuUGCGCc -3'
miRNA:   3'- ucguCGUC-CGGU-CGCGGCUuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 61358 0.66 0.701782
Target:  5'- cGCAGCaacgucgggagccGGGCCAuguuuuggcGCGCCGGcg-GCGg -3'
miRNA:   3'- uCGUCG-------------UCCGGU---------CGCGGCUuuaUGCg -5'
30757 3' -55.9 NC_006552.1 + 8420 0.66 0.692082
Target:  5'- gGGCu-CAGGCC-GCGCC-AGGcGCGCa -3'
miRNA:   3'- -UCGucGUCCGGuCGCGGcUUUaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 38368 0.66 0.692082
Target:  5'- cAGCAGCAGuucgcccaCCAGgGuCCGGccgGCGCg -3'
miRNA:   3'- -UCGUCGUCc-------GGUCgC-GGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 21913 0.66 0.692082
Target:  5'- -cCAGCAGcGCCuGCacgGCCu-GAUGCGCg -3'
miRNA:   3'- ucGUCGUC-CGGuCG---CGGcuUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 3573 0.66 0.692082
Target:  5'- cAGguGCuGGCCgAGcCGCCG----GCGCc -3'
miRNA:   3'- -UCguCGuCCGG-UC-GCGGCuuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 11332 0.66 0.670374
Target:  5'- cGGCGGCGucgauGGCUuccucggugacGGCgGCCGAGGUugGg -3'
miRNA:   3'- -UCGUCGU-----CCGG-----------UCG-CGGCUUUAugCg -5'
30757 3' -55.9 NC_006552.1 + 26193 0.66 0.670374
Target:  5'- cGcCAGUAGGCCAGgugcuUGCCGGucggcAUGgGCg -3'
miRNA:   3'- uC-GUCGUCCGGUC-----GCGGCUu----UAUgCG- -5'
30757 3' -55.9 NC_006552.1 + 35422 0.66 0.670374
Target:  5'- uGGCAGCcuGGGCCGcagccuucGCGUCu---UGCGCg -3'
miRNA:   3'- -UCGUCG--UCCGGU--------CGCGGcuuuAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 25630 0.67 0.659461
Target:  5'- cAGUGGcCAGGUCGGCGgCCauuucuuUGCGCa -3'
miRNA:   3'- -UCGUC-GUCCGGUCGC-GGcuuu---AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 33507 0.67 0.648523
Target:  5'- gGGCAGCGcgaaCAGCGCCuugcugGAAcugGUGCGCa -3'
miRNA:   3'- -UCGUCGUccg-GUCGCGG------CUU---UAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 28737 0.67 0.648523
Target:  5'- gGGaAGCcGGCCGGCGgCGAAGgcAUGCc -3'
miRNA:   3'- -UCgUCGuCCGGUCGCgGCUUUa-UGCG- -5'
30757 3' -55.9 NC_006552.1 + 14760 0.67 0.648523
Target:  5'- uGCGGCAuGUCGGCGCgaGGGAUGCcCa -3'
miRNA:   3'- uCGUCGUcCGGUCGCGg-CUUUAUGcG- -5'
30757 3' -55.9 NC_006552.1 + 36379 0.67 0.641953
Target:  5'- cAGCAauGCGGauuacuccgcgucucGCCGGCGCuCGGAG-ACGCc -3'
miRNA:   3'- -UCGU--CGUC---------------CGGUCGCG-GCUUUaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.