miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30806 5' -62.2 NC_006552.1 + 53597 0.66 0.410954
Target:  5'- cGGCCAGUUCggUGcCGCCgGCugagguGGaGGCc -3'
miRNA:   3'- -UCGGUCGGGuuGC-GCGGgCGu-----UC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 15463 0.66 0.410954
Target:  5'- uGCCGGCgCCAGCGauacaGCCgGUuguGcGGCu -3'
miRNA:   3'- uCGGUCG-GGUUGCg----CGGgCGuu-C-CCG- -5'
30806 5' -62.2 NC_006552.1 + 26468 0.66 0.384844
Target:  5'- cAGCCAcGCCaCAGC-CGCgCCGUAGGuGCc -3'
miRNA:   3'- -UCGGU-CGG-GUUGcGCG-GGCGUUCcCG- -5'
30806 5' -62.2 NC_006552.1 + 45399 0.66 0.384844
Target:  5'- uGCuCGGCgCCGACGaauucCCCGCccGGGGCc -3'
miRNA:   3'- uCG-GUCG-GGUUGCgc---GGGCGu-UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 15525 0.66 0.382294
Target:  5'- gGGCCuGCUgGAUGuCGuCCUGCAcgccgauuggcgucGGGGCu -3'
miRNA:   3'- -UCGGuCGGgUUGC-GC-GGGCGU--------------UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 58201 0.66 0.376388
Target:  5'- uGGCCgaAGCCaCGcUGCGCCgGguggcUAAGGGCg -3'
miRNA:   3'- -UCGG--UCGG-GUuGCGCGGgC-----GUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 57296 0.66 0.376388
Target:  5'- uGCCucuGGCUCAACGaUGCCgCGCGcAGuGGCc -3'
miRNA:   3'- uCGG---UCGGGUUGC-GCGG-GCGU-UC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 4767 0.66 0.368058
Target:  5'- uGCCGGCUgcgucaccugCGGCGCcaccacuacaGCCCccaccugcgGCGGGGGCg -3'
miRNA:   3'- uCGGUCGG----------GUUGCG----------CGGG---------CGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 44187 0.67 0.359856
Target:  5'- cGCCgacGGUCCAugucuuCGCGCUcguggCGCAGGuGGCg -3'
miRNA:   3'- uCGG---UCGGGUu-----GCGCGG-----GCGUUC-CCG- -5'
30806 5' -62.2 NC_006552.1 + 50065 0.67 0.359043
Target:  5'- aAGCgCAGUCUgcaaucgAGCGCGacaaCCGCAcgcGGGCg -3'
miRNA:   3'- -UCG-GUCGGG-------UUGCGCg---GGCGUu--CCCG- -5'
30806 5' -62.2 NC_006552.1 + 33370 0.67 0.351782
Target:  5'- gGGCCAGC---ACGgGCCgGCccuucguAGGGCg -3'
miRNA:   3'- -UCGGUCGgguUGCgCGGgCGu------UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 19743 0.67 0.351782
Target:  5'- cGCUGGCCgCuGCGCGCCagGCuucuaccuGGGCc -3'
miRNA:   3'- uCGGUCGG-GuUGCGCGGg-CGuu------CCCG- -5'
30806 5' -62.2 NC_006552.1 + 21059 0.67 0.351782
Target:  5'- cGGCCAGCagguCGUcgauauucagGCCCcCAGGGGCu -3'
miRNA:   3'- -UCGGUCGgguuGCG----------CGGGcGUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 5074 0.67 0.343838
Target:  5'- aGGCCAG-CCAGCGCuaUCGCAGccagaacGGCg -3'
miRNA:   3'- -UCGGUCgGGUUGCGcgGGCGUUc------CCG- -5'
30806 5' -62.2 NC_006552.1 + 52119 0.67 0.343051
Target:  5'- cAGCagAGCCCAgcgcuacccagugGCGCGCCCGCGu---- -3'
miRNA:   3'- -UCGg-UCGGGU-------------UGCGCGGGCGUucccg -5'
30806 5' -62.2 NC_006552.1 + 64756 0.67 0.336023
Target:  5'- cGCuCAacaucGUCCAACGCGCCaccgaCGCccuGGGCa -3'
miRNA:   3'- uCG-GU-----CGGGUUGCGCGG-----GCGuu-CCCG- -5'
30806 5' -62.2 NC_006552.1 + 32022 0.67 0.336023
Target:  5'- uGUCGGCCa---GCGCCaugucaGcCAGGGGCg -3'
miRNA:   3'- uCGGUCGGguugCGCGGg-----C-GUUCCCG- -5'
30806 5' -62.2 NC_006552.1 + 33214 0.67 0.336023
Target:  5'- cGCCGGCCagGAUGcCGCgCUGCAugucuuccGGGCa -3'
miRNA:   3'- uCGGUCGGg-UUGC-GCG-GGCGUu-------CCCG- -5'
30806 5' -62.2 NC_006552.1 + 61170 0.67 0.331397
Target:  5'- gAGCCAugcgaccacGCUCGGCaaGCCUGCGccgauaucggcugcuGGGGCg -3'
miRNA:   3'- -UCGGU---------CGGGUUGcgCGGGCGU---------------UCCCG- -5'
30806 5' -62.2 NC_006552.1 + 62238 0.67 0.328339
Target:  5'- gAGuCCAGCCaCGgaaucGCGCGCCUGCuugaaauguGcGGCa -3'
miRNA:   3'- -UC-GGUCGG-GU-----UGCGCGGGCGuu-------C-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.