Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30876 | 3' | -57.1 | NC_006552.1 | + | 33784 | 0.66 | 0.670894 |
Target: 5'- -cCgGCCGCGUUGGUCGCGAgcugauaACGCa- -3' miRNA: 3'- caGgUGGCGUAGUCGGUGCU-------UGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 8481 | 0.66 | 0.6612 |
Target: 5'- uGUCCGCCuucuCGUCGGCCGuCaGACGCa- -3' miRNA: 3'- -CAGGUGGc---GUAGUCGGU-GcUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 31388 | 0.66 | 0.650405 |
Target: 5'- cGUCaCAuCCGCAccgUCGGCgGCGc-CGCCAg -3' miRNA: 3'- -CAG-GU-GGCGU---AGUCGgUGCuuGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 3655 | 0.66 | 0.650405 |
Target: 5'- -aCCGCCGaCGaCGGUgAccCGAACGCCAg -3' miRNA: 3'- caGGUGGC-GUaGUCGgU--GCUUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 56863 | 0.66 | 0.650405 |
Target: 5'- --gCGCCGCGgcgAGCgGCGAACGCa- -3' miRNA: 3'- cagGUGGCGUag-UCGgUGCUUGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 63206 | 0.66 | 0.639593 |
Target: 5'- uGUCCugGCCGCAaCGGUgaacccucgcggCACGuGCGCCGg -3' miRNA: 3'- -CAGG--UGGCGUaGUCG------------GUGCuUGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 921 | 0.66 | 0.639593 |
Target: 5'- -gCCACUGU-UCAGCCACGugucgaAACGUCu -3' miRNA: 3'- caGGUGGCGuAGUCGGUGC------UUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 63598 | 0.66 | 0.639593 |
Target: 5'- aUCCACCaCAcCAGCC-CGcAGCGCUg -3' miRNA: 3'- cAGGUGGcGUaGUCGGuGC-UUGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 40565 | 0.66 | 0.639593 |
Target: 5'- aGUCCGCgCGCuuggUGGCCACGuaccACGCa- -3' miRNA: 3'- -CAGGUG-GCGua--GUCGGUGCu---UGCGgu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 11254 | 0.66 | 0.639593 |
Target: 5'- gGUCUgcucgcggAUCGCGUCGGCCAauAugGCCc -3' miRNA: 3'- -CAGG--------UGGCGUAGUCGGUgcUugCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 41025 | 0.66 | 0.628775 |
Target: 5'- aGUUCAuCCGCGUUGGCUGCGGccguagggaaGCGCUc -3' miRNA: 3'- -CAGGU-GGCGUAGUCGGUGCU----------UGCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 11994 | 0.66 | 0.628775 |
Target: 5'- aGUCCACCGUcUCGGCgucCACcggcuCGCCGc -3' miRNA: 3'- -CAGGUGGCGuAGUCG---GUGcuu--GCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 41395 | 0.66 | 0.628775 |
Target: 5'- -gCCACUcaGgGUCAGCCAgGcagcGCGCCAg -3' miRNA: 3'- caGGUGG--CgUAGUCGGUgCu---UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 24549 | 0.66 | 0.628775 |
Target: 5'- -aCCACCuGCAugacuUCAGCCAUGGcacCGCUg -3' miRNA: 3'- caGGUGG-CGU-----AGUCGGUGCUu--GCGGu -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 28475 | 0.66 | 0.627693 |
Target: 5'- aUCCACCGaGUCgaAGCCGcCGAugcggucgaaguaACGCCGc -3' miRNA: 3'- cAGGUGGCgUAG--UCGGU-GCU-------------UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 51473 | 0.67 | 0.607156 |
Target: 5'- --aCugCGCAcCAGCCugGAA-GCCGc -3' miRNA: 3'- cagGugGCGUaGUCGGugCUUgCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 14693 | 0.67 | 0.596374 |
Target: 5'- uUCCugauGCUGCAc--GCCACGAGCGCuCAg -3' miRNA: 3'- cAGG----UGGCGUaguCGGUGCUUGCG-GU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 7207 | 0.67 | 0.593145 |
Target: 5'- cGUCCccggcgcgcagcgaGCCGCu---GCCGCGGgccuGCGCCAu -3' miRNA: 3'- -CAGG--------------UGGCGuaguCGGUGCU----UGCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 16319 | 0.67 | 0.579186 |
Target: 5'- cGUCCGCaucCGUCaAGCCACGGGaugcggccggcugacCGCCAu -3' miRNA: 3'- -CAGGUGgc-GUAG-UCGGUGCUU---------------GCGGU- -5' |
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30876 | 3' | -57.1 | NC_006552.1 | + | 32027 | 0.67 | 0.574905 |
Target: 5'- -gCCAgCGCcauGUCAGCCAgGGGCGUg- -3' miRNA: 3'- caGGUgGCG---UAGUCGGUgCUUGCGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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