miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30906 5' -63.6 NC_006552.1 + 28685 0.66 0.377066
Target:  5'- cGGCg-GCGCCacGCCGCCuGGcaagaucgGCCuGGCa -3'
miRNA:   3'- -UCGagCGCGG--UGGCGG-CCua------CGG-CCG- -5'
30906 5' -63.6 NC_006552.1 + 63228 0.66 0.377066
Target:  5'- -cCUCGCGgCACgugCGCCGGcuGUGCCuaucgccucGGCa -3'
miRNA:   3'- ucGAGCGCgGUG---GCGGCC--UACGG---------CCG- -5'
30906 5' -63.6 NC_006552.1 + 32107 0.66 0.372135
Target:  5'- cAGCgaaGUGUCGCC-CUGGAuggcguacagcggcuUGCCGGUg -3'
miRNA:   3'- -UCGag-CGCGGUGGcGGCCU---------------ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 62954 0.66 0.368871
Target:  5'- cGCUgaCGCGCacgaACUgGCCGGcgccguucuucUGCCGGCg -3'
miRNA:   3'- uCGA--GCGCGg---UGG-CGGCCu----------ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 60021 0.66 0.368871
Target:  5'- cGCUccCGCGCCACCuGCUGGcGUGacgUGGUu -3'
miRNA:   3'- uCGA--GCGCGGUGG-CGGCC-UACg--GCCG- -5'
30906 5' -63.6 NC_006552.1 + 2052 0.66 0.368871
Target:  5'- aGGCgcuugagCGCGCCGgCGUCG--UGCgCGGCc -3'
miRNA:   3'- -UCGa------GCGCGGUgGCGGCcuACG-GCCG- -5'
30906 5' -63.6 NC_006552.1 + 13448 0.66 0.368871
Target:  5'- cGCUCGUcaGCaCGCUGCCaucgGUCGGCg -3'
miRNA:   3'- uCGAGCG--CG-GUGGCGGccuaCGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 16790 0.66 0.3608
Target:  5'- cAGC-CGCGCCgGCUGCCacaGGUGCCaacGCu -3'
miRNA:   3'- -UCGaGCGCGG-UGGCGGc--CUACGGc--CG- -5'
30906 5' -63.6 NC_006552.1 + 31953 0.66 0.3608
Target:  5'- cGCgauacaGCGcCCACUGgaCCaGAUGCCGGUg -3'
miRNA:   3'- uCGag----CGC-GGUGGC--GGcCUACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 32645 0.66 0.3608
Target:  5'- uGCgagCGCGCUcCUGCUGGGccUGCUGaGCc -3'
miRNA:   3'- uCGa--GCGCGGuGGCGGCCU--ACGGC-CG- -5'
30906 5' -63.6 NC_006552.1 + 14733 0.66 0.358402
Target:  5'- --aUCGCGCCGCggUGCuCGGccuugaucugcggcAUGUCGGCg -3'
miRNA:   3'- ucgAGCGCGGUG--GCG-GCC--------------UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 15725 0.66 0.352851
Target:  5'- cGCUcaccgaCGCGCUGCauguaGCCGGcAU-CCGGCg -3'
miRNA:   3'- uCGA------GCGCGGUGg----CGGCC-UAcGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 35092 0.66 0.352851
Target:  5'- cGGCgUCGCuGgUGCCGCuCGGcaucuUGCCGGUc -3'
miRNA:   3'- -UCG-AGCG-CgGUGGCG-GCCu----ACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 48984 0.66 0.352851
Target:  5'- cGUUCccCGCCuccCCGCCGGGcaaGCCcGGCg -3'
miRNA:   3'- uCGAGc-GCGGu--GGCGGCCUa--CGG-CCG- -5'
30906 5' -63.6 NC_006552.1 + 15492 0.66 0.352063
Target:  5'- cGGCUUGCGCCugcugcgcgucaGCCuugccuugggccuGCUGGAUGUCGuccuGCa -3'
miRNA:   3'- -UCGAGCGCGG------------UGG-------------CGGCCUACGGC----CG- -5'
30906 5' -63.6 NC_006552.1 + 60278 0.66 0.345028
Target:  5'- cGC-CGCGCCACCcgGCUGGcccuggGCauCGGCc -3'
miRNA:   3'- uCGaGCGCGGUGG--CGGCCua----CG--GCCG- -5'
30906 5' -63.6 NC_006552.1 + 21857 0.66 0.345028
Target:  5'- cAGgUCGCG-CGCCGCCaGAUgguccagcaccaGCgCGGCa -3'
miRNA:   3'- -UCgAGCGCgGUGGCGGcCUA------------CG-GCCG- -5'
30906 5' -63.6 NC_006552.1 + 61184 0.66 0.345028
Target:  5'- cGCUCGgcaaGCCugCGCCG-AUaUCGGCu -3'
miRNA:   3'- uCGAGCg---CGGugGCGGCcUAcGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 54529 0.66 0.345028
Target:  5'- cGCaaGCGCaccuUCGCCGcaaucAUGCCGGCg -3'
miRNA:   3'- uCGagCGCGgu--GGCGGCc----UACGGCCG- -5'
30906 5' -63.6 NC_006552.1 + 21168 0.66 0.33733
Target:  5'- aGGCgcaucCG-GCCG-CGUCGG-UGCCGGCa -3'
miRNA:   3'- -UCGa----GCgCGGUgGCGGCCuACGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.