miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30908 3' -60.7 NC_006552.1 + 33481 0.66 0.468525
Target:  5'- aUGGugauaACCAGGuUGGCGUccuugGGCAGCGcgaacAGCg -3'
miRNA:   3'- -ACC-----UGGUCC-GCCGCG-----UCGUCGU-----UCGg -5'
30908 3' -60.7 NC_006552.1 + 30354 0.66 0.458869
Target:  5'- aGcGCCAGGuCGGCGUuGUAGUu-GCCc -3'
miRNA:   3'- aCcUGGUCC-GCCGCGuCGUCGuuCGG- -5'
30908 3' -60.7 NC_006552.1 + 34825 0.66 0.458869
Target:  5'- -cGGCCgAGGCGGCGCAGgucGUAGGg- -3'
miRNA:   3'- acCUGG-UCCGCCGCGUCgu-CGUUCgg -5'
30908 3' -60.7 NC_006552.1 + 28922 0.66 0.449321
Target:  5'- cUGGAauCCGGcCGGCuCGGCaaGGUGAGCCa -3'
miRNA:   3'- -ACCU--GGUCcGCCGcGUCG--UCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 53902 0.66 0.449321
Target:  5'- aGGGCCAGGaCGGC-CAGgaccacuaCAGCAccgagguaguGGUCg -3'
miRNA:   3'- aCCUGGUCC-GCCGcGUC--------GUCGU----------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 22522 0.66 0.446478
Target:  5'- gUGGGCCGccuugugaucGGCGaGCGCgguaugcccccAGCGGCGgcgcaguccauccuGGCCc -3'
miRNA:   3'- -ACCUGGU----------CCGC-CGCG-----------UCGUCGU--------------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 27610 0.66 0.430559
Target:  5'- aGGAugcCCAGGUaGGUGCugauGCGcGCcGAGCCg -3'
miRNA:   3'- aCCU---GGUCCG-CCGCGu---CGU-CG-UUCGG- -5'
30908 3' -60.7 NC_006552.1 + 59389 0.66 0.430559
Target:  5'- -cGAuCCAuGGagGGCGCGGCAGCGucaGGCg -3'
miRNA:   3'- acCU-GGU-CCg-CCGCGUCGUCGU---UCGg -5'
30908 3' -60.7 NC_006552.1 + 47890 0.66 0.421353
Target:  5'- aGGGCaccGGCcGCGUGGCGGUGAGUa -3'
miRNA:   3'- aCCUGgu-CCGcCGCGUCGUCGUUCGg -5'
30908 3' -60.7 NC_006552.1 + 57153 0.66 0.421353
Target:  5'- gGGACCuGGCGGCGUuccucaaggGGUugaccGGCAugguGGUCc -3'
miRNA:   3'- aCCUGGuCCGCCGCG---------UCG-----UCGU----UCGG- -5'
30908 3' -60.7 NC_006552.1 + 60440 0.67 0.412265
Target:  5'- cUGGACCAGGCc-CGCcaGGCAcGCAAGg- -3'
miRNA:   3'- -ACCUGGUCCGccGCG--UCGU-CGUUCgg -5'
30908 3' -60.7 NC_006552.1 + 33379 0.67 0.397981
Target:  5'- cGGGCCGgcccuucguagggcGGCGGCGCuuagacugcgccgaGGC-GCucGCCg -3'
miRNA:   3'- aCCUGGU--------------CCGCCGCG--------------UCGuCGuuCGG- -5'
30908 3' -60.7 NC_006552.1 + 61034 0.67 0.394459
Target:  5'- -uGAUCAGGC-GCGCuGGCGGcCGAGCa -3'
miRNA:   3'- acCUGGUCCGcCGCG-UCGUC-GUUCGg -5'
30908 3' -60.7 NC_006552.1 + 10442 0.67 0.394459
Target:  5'- uUGGuuACCAGuagcgagaCGGCGCA--GGCGAGCCa -3'
miRNA:   3'- -ACC--UGGUCc-------GCCGCGUcgUCGUUCGG- -5'
30908 3' -60.7 NC_006552.1 + 4731 0.67 0.394459
Target:  5'- -aGGCCgAGGCGGCGUcuccugcaccAGCuucGGCGGuGCCg -3'
miRNA:   3'- acCUGG-UCCGCCGCG----------UCG---UCGUU-CGG- -5'
30908 3' -60.7 NC_006552.1 + 16028 0.67 0.394459
Target:  5'- -uGuCCAcGGCcuGCGCAGCAGCAccagaaaguGGCCc -3'
miRNA:   3'- acCuGGU-CCGc-CGCGUCGUCGU---------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 32453 0.67 0.385745
Target:  5'- cGGAUCAGGuCGGC-CAGCGuCAuaccgcGCCa -3'
miRNA:   3'- aCCUGGUCC-GCCGcGUCGUcGUu-----CGG- -5'
30908 3' -60.7 NC_006552.1 + 30077 0.67 0.385745
Target:  5'- aUGGACgAuGCGG-GUAGCAgGCuGGCCa -3'
miRNA:   3'- -ACCUGgUcCGCCgCGUCGU-CGuUCGG- -5'
30908 3' -60.7 NC_006552.1 + 34510 0.67 0.377159
Target:  5'- ----aCGGGCGGCgGCGGCAGCucgaucuGGUCc -3'
miRNA:   3'- accugGUCCGCCG-CGUCGUCGu------UCGG- -5'
30908 3' -60.7 NC_006552.1 + 7202 0.67 0.368703
Target:  5'- cGucCCGucccCGGCGC-GCAGCGAGCCg -3'
miRNA:   3'- aCcuGGUcc--GCCGCGuCGUCGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.