Results 21 - 40 of 123 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30991 | 3' | -58.5 | NC_006560.1 | + | 42533 | 0.72 | 0.439888 |
Target: 5'- aGCCGCa-GCcccagCGCCCCGGGGUCGCGc -3' miRNA: 3'- -UGGUGgcUGa----GUGGGGUCCUAGCGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 4525 | 0.72 | 0.457852 |
Target: 5'- gGCCGCCGuagaGCacgCGCCCCGGGggCGgGGg -3' miRNA: 3'- -UGGUGGC----UGa--GUGGGGUCCuaGCgUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 131406 | 0.72 | 0.457852 |
Target: 5'- gGCCGCgGACgcgCGCCCCuGGGcccgggccgUCGCGGc -3' miRNA: 3'- -UGGUGgCUGa--GUGGGGuCCU---------AGCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 113837 | 0.72 | 0.466064 |
Target: 5'- uACCACCaGCUgcggacgggccugCACCCCGGGAUCGg-- -3' miRNA: 3'- -UGGUGGcUGA-------------GUGGGGUCCUAGCguc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 40487 | 0.72 | 0.466981 |
Target: 5'- aGCCcCUGGCUCGCCaggcgCAGGAggaucUCGCAGg -3' miRNA: 3'- -UGGuGGCUGAGUGGg----GUCCU-----AGCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 27781 | 0.71 | 0.493967 |
Target: 5'- gGCCACCGACgccgCGCCCgGccgccguuccuucGGcgCGCGGg -3' miRNA: 3'- -UGGUGGCUGa---GUGGGgU-------------CCuaGCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 25046 | 0.71 | 0.49491 |
Target: 5'- cGCCGCCGACUCGCCCgCGcGcGAg-GCGGc -3' miRNA: 3'- -UGGUGGCUGAGUGGG-GU-C-CUagCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 69664 | 0.71 | 0.49491 |
Target: 5'- cCCGCCGcgcccGC-CACCCCGGGGUCgGCGc -3' miRNA: 3'- uGGUGGC-----UGaGUGGGGUCCUAG-CGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 133985 | 0.71 | 0.523574 |
Target: 5'- cCCcCCGGCUCgcGCCCCAGG-UCGgCGGc -3' miRNA: 3'- uGGuGGCUGAG--UGGGGUCCuAGC-GUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 46322 | 0.71 | 0.543033 |
Target: 5'- cGCCcuaGCCGGC-CGCgCCCAGGGUagcucCGCGGg -3' miRNA: 3'- -UGG---UGGCUGaGUG-GGGUCCUA-----GCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 5683 | 0.71 | 0.543033 |
Target: 5'- gGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3' miRNA: 3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 54681 | 0.7 | 0.552852 |
Target: 5'- aGCCGCCGGCcgCGCCCUcguaguccgugGGGGUCGgGu -3' miRNA: 3'- -UGGUGGCUGa-GUGGGG-----------UCCUAGCgUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 9549 | 0.7 | 0.552852 |
Target: 5'- gGCCGgCGGCggccaGCCCCAGGGcCGCGc -3' miRNA: 3'- -UGGUgGCUGag---UGGGGUCCUaGCGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 5722 | 0.7 | 0.562723 |
Target: 5'- uGCgGCCGGCggCGCCgCCcgucgAGGAUCGCAu -3' miRNA: 3'- -UGgUGGCUGa-GUGG-GG-----UCCUAGCGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 27358 | 0.7 | 0.562723 |
Target: 5'- cGCCGCCGAacCGCCCCgccGGGAaacgcggCGCGGg -3' miRNA: 3'- -UGGUGGCUgaGUGGGG---UCCUa------GCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 49078 | 0.7 | 0.566686 |
Target: 5'- uCCGCCGGCUCcgagggcgccgagguGCUCCGGGAgcaCGCGu -3' miRNA: 3'- uGGUGGCUGAG---------------UGGGGUCCUa--GCGUc -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 32470 | 0.7 | 0.572642 |
Target: 5'- gGCUGCgGGCUC-CCCCGGGGcgccaGCAGg -3' miRNA: 3'- -UGGUGgCUGAGuGGGGUCCUag---CGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 44149 | 0.7 | 0.582601 |
Target: 5'- -aCAgCGGCUCGgcCCCCAGGGU-GCAGu -3' miRNA: 3'- ugGUgGCUGAGU--GGGGUCCUAgCGUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 35172 | 0.7 | 0.592595 |
Target: 5'- gGCCGCCGGgcccggggcCcCGCCCCGGGggCGcCGGg -3' miRNA: 3'- -UGGUGGCU---------GaGUGGGGUCCuaGC-GUC- -5' |
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30991 | 3' | -58.5 | NC_006560.1 | + | 112260 | 0.7 | 0.592595 |
Target: 5'- -gCGCCGGCUCGCCCaCGgccgccuccgcuGGGUgGCGGa -3' miRNA: 3'- ugGUGGCUGAGUGGG-GU------------CCUAgCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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