miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30991 3' -58.5 NC_006560.1 + 119388 0.66 0.817913
Target:  5'- aACCGCCGGCUgCAcgcccucguggucuuCCCCGGcGGcuUCGCGu -3'
miRNA:   3'- -UGGUGGCUGA-GU---------------GGGGUC-CU--AGCGUc -5'
30991 3' -58.5 NC_006560.1 + 119311 0.66 0.797097
Target:  5'- cGCCGCCcaauGC-CGCCCgCAGGGUCuGCGa -3'
miRNA:   3'- -UGGUGGc---UGaGUGGG-GUCCUAG-CGUc -5'
30991 3' -58.5 NC_006560.1 + 113837 0.72 0.466064
Target:  5'- uACCACCaGCUgcggacgggccugCACCCCGGGAUCGg-- -3'
miRNA:   3'- -UGGUGGcUGA-------------GUGGGGUCCUAGCguc -5'
30991 3' -58.5 NC_006560.1 + 113196 0.67 0.741681
Target:  5'- gGCCGCUG-CUgCACCgCCGGGGUgCGCu- -3'
miRNA:   3'- -UGGUGGCuGA-GUGG-GGUCCUA-GCGuc -5'
30991 3' -58.5 NC_006560.1 + 112260 0.7 0.592595
Target:  5'- -gCGCCGGCUCGCCCaCGgccgccuccgcuGGGUgGCGGa -3'
miRNA:   3'- ugGUGGCUGAGUGGG-GU------------CCUAgCGUC- -5'
30991 3' -58.5 NC_006560.1 + 110438 0.68 0.70277
Target:  5'- gGCCGCCG-C-CGCCCUGuGGGUgGCGGc -3'
miRNA:   3'- -UGGUGGCuGaGUGGGGU-CCUAgCGUC- -5'
30991 3' -58.5 NC_006560.1 + 110372 0.67 0.751199
Target:  5'- gGCCGCCgGGCaggCGCgCCAGGc-CGCAGa -3'
miRNA:   3'- -UGGUGG-CUGa--GUGgGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 109766 0.67 0.779111
Target:  5'- gGCCGCgCaGC-CGCCCCGGGGUgGCc- -3'
miRNA:   3'- -UGGUG-GcUGaGUGGGGUCCUAgCGuc -5'
30991 3' -58.5 NC_006560.1 + 106760 0.68 0.722375
Target:  5'- gACCugCGGgaCGCCCUGGGc-CGCAGc -3'
miRNA:   3'- -UGGugGCUgaGUGGGGUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 106454 0.67 0.741681
Target:  5'- gACCGCCGGCUCucgGCCCUcGcGcUCGCGu -3'
miRNA:   3'- -UGGUGGCUGAG---UGGGGuC-CuAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 101937 0.75 0.333785
Target:  5'- gUCGCCGAUggcgCGCgCCAGGGUCGCGa -3'
miRNA:   3'- uGGUGGCUGa---GUGgGGUCCUAGCGUc -5'
30991 3' -58.5 NC_006560.1 + 97598 0.68 0.70277
Target:  5'- cCCGCCGGCUgaACCCCGGcGccAUCGCc- -3'
miRNA:   3'- uGGUGGCUGAg-UGGGGUC-C--UAGCGuc -5'
30991 3' -58.5 NC_006560.1 + 97382 0.68 0.70277
Target:  5'- gGCgGCCGGCcgggggCgACCCCGGGGagGCGGc -3'
miRNA:   3'- -UGgUGGCUGa-----G-UGGGGUCCUagCGUC- -5'
30991 3' -58.5 NC_006560.1 + 96706 0.68 0.721402
Target:  5'- cACCACCGAcCUCaaguacaACCCCGcgcGGGUCG-AGg -3'
miRNA:   3'- -UGGUGGCU-GAG-------UGGGGU---CCUAGCgUC- -5'
30991 3' -58.5 NC_006560.1 + 96000 0.76 0.277772
Target:  5'- aGCCGCCcGCgCGCCCCGGGAugcggccUCGCGGc -3'
miRNA:   3'- -UGGUGGcUGaGUGGGGUCCU-------AGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 93780 0.67 0.73207
Target:  5'- uCCugCGGCgcugCgAUCCCAGGAUcggcCGCGGa -3'
miRNA:   3'- uGGugGCUGa---G-UGGGGUCCUA----GCGUC- -5'
30991 3' -58.5 NC_006560.1 + 88909 0.66 0.797097
Target:  5'- cGCCgGCCGGCcgugccugUCGCuCCCGGGcgCGCu- -3'
miRNA:   3'- -UGG-UGGCUG--------AGUG-GGGUCCuaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 84385 0.74 0.380347
Target:  5'- cGCCucCCGGCUCGCCCgcgacgacggCAGGggCGCGGc -3'
miRNA:   3'- -UGGu-GGCUGAGUGGG----------GUCCuaGCGUC- -5'
30991 3' -58.5 NC_006560.1 + 84358 0.69 0.662937
Target:  5'- cGCCucCCGGCUCG-CCCGGGAcCGCc- -3'
miRNA:   3'- -UGGu-GGCUGAGUgGGGUCCUaGCGuc -5'
30991 3' -58.5 NC_006560.1 + 82958 0.66 0.814506
Target:  5'- uACCGCCu-CUCGCCCCGauGGGcCGCc- -3'
miRNA:   3'- -UGGUGGcuGAGUGGGGU--CCUaGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.