miRNA display CGI


Results 21 - 40 of 107 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30997 3' -59.5 NC_006560.1 + 125835 0.68 0.593071
Target:  5'- gGGUGgUGAcGCAGCccccgAGC-CaGCCCCCGc -3'
miRNA:   3'- aCCACaACU-CGUCG-----UCGuG-CGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 125443 0.69 0.583041
Target:  5'- cUGGUGaccuucaucGGGCGGCAccGCACGCCCgaCGa -3'
miRNA:   3'- -ACCACaa-------CUCGUCGU--CGUGCGGGg-GC- -5'
30997 3' -59.5 NC_006560.1 + 124923 0.66 0.713483
Target:  5'- cGGcUGccUGAGCcccaccccCGGCACGCCCCUGc -3'
miRNA:   3'- aCC-ACa-ACUCGuc------GUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 122564 0.74 0.297793
Target:  5'- cGGUGgcgacUGAGcCGGuCGGCcCGCCCCCGc -3'
miRNA:   3'- aCCACa----ACUC-GUC-GUCGuGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 121408 0.68 0.609174
Target:  5'- aGGUGUUGAggacgcuGUAGUaggcguugcgcuggGGCACGacguCCCCCGg -3'
miRNA:   3'- aCCACAACU-------CGUCG--------------UCGUGC----GGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 120632 0.66 0.750278
Target:  5'- cGGUGgcgaggGAGUAGCGaccGCcugucuccgaccCGCCCCCGc -3'
miRNA:   3'- aCCACaa----CUCGUCGU---CGu-----------GCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 120509 0.73 0.333387
Target:  5'- aGGUGgucgcgGGGCAGCGGgGCGCCgagaggauccggCCCGa -3'
miRNA:   3'- aCCACaa----CUCGUCGUCgUGCGG------------GGGC- -5'
30997 3' -59.5 NC_006560.1 + 119509 0.66 0.758797
Target:  5'- aGGUGccuccGGGCcGCggggccgcgcgcuaAGCGCGCCCCgCGg -3'
miRNA:   3'- aCCACaa---CUCGuCG--------------UCGUGCGGGG-GC- -5'
30997 3' -59.5 NC_006560.1 + 118646 0.8 0.129776
Target:  5'- cGGUGgcgugGGGCGGCcGCaACGCCCCCGc -3'
miRNA:   3'- aCCACaa---CUCGUCGuCG-UGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 116833 0.72 0.396589
Target:  5'- gUGGUGgucgagGGGCGGUAGagcaggaaGCGCuCCCCGg -3'
miRNA:   3'- -ACCACaa----CUCGUCGUCg-------UGCG-GGGGC- -5'
30997 3' -59.5 NC_006560.1 + 116417 0.66 0.733001
Target:  5'- aGGaagaagGGGUagAGCAcCGCGCCCCCGg -3'
miRNA:   3'- aCCacaa--CUCG--UCGUcGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 115465 0.69 0.543328
Target:  5'- cUGGUGgcGcGCGGCAucCGCGCCCUCa -3'
miRNA:   3'- -ACCACaaCuCGUCGUc-GUGCGGGGGc -5'
30997 3' -59.5 NC_006560.1 + 115093 0.66 0.742637
Target:  5'- gUGGUGUuucUGccgacgauccGGCGGCAGCugGCgCUggCCGa -3'
miRNA:   3'- -ACCACA---AC----------UCGUCGUCGugCG-GG--GGC- -5'
30997 3' -59.5 NC_006560.1 + 114922 0.7 0.495029
Target:  5'- cGGccccaGAGCGGCcccgguuucGCACGCCCCCGc -3'
miRNA:   3'- aCCacaa-CUCGUCGu--------CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 114055 0.72 0.405014
Target:  5'- -cGUGgccacGGCGGCcguGCGCGCCCCCGu -3'
miRNA:   3'- acCACaac--UCGUCGu--CGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 110550 0.68 0.603129
Target:  5'- gGGUGggugGGGcCAGCGGgguauauaaacCGCGCUCCCGc -3'
miRNA:   3'- aCCACaa--CUC-GUCGUC-----------GUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 109182 0.68 0.613207
Target:  5'- cGGUcgcgUGGGCGGCAgacggaguagacGCAC-CCCCCGc -3'
miRNA:   3'- aCCAca--ACUCGUCGU------------CGUGcGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 103114 0.75 0.265218
Target:  5'- cGGcGgcgGAcGCgggGGCGGCGCGCCCCCGg -3'
miRNA:   3'- aCCaCaa-CU-CG---UCGUCGUGCGGGGGC- -5'
30997 3' -59.5 NC_006560.1 + 100175 0.69 0.560113
Target:  5'- cGGUGgaGAGCAGC-GCGCgggugagcgucucgGCgCCCGg -3'
miRNA:   3'- aCCACaaCUCGUCGuCGUG--------------CGgGGGC- -5'
30997 3' -59.5 NC_006560.1 + 99764 0.67 0.673707
Target:  5'- gGGUGgggGGGC-GC-GUACGCCgCCGg -3'
miRNA:   3'- aCCACaa-CUCGuCGuCGUGCGGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.