miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31005 5' -54 NC_006560.1 + 108775 0.69 0.880219
Target:  5'- gGGAGGUGGccuGCacgagGGCGAAG-GCGUaCGGGg -3'
miRNA:   3'- -UCUUCACC---CG-----CCGCUUCaUGCA-GUCC- -5'
31005 5' -54 NC_006560.1 + 108508 0.75 0.536011
Target:  5'- gGGggGaGGGCGGCcggcggcgggcccgGggGcGCGUCGGGg -3'
miRNA:   3'- -UCuuCaCCCGCCG--------------CuuCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 107976 0.72 0.751981
Target:  5'- cGggGaGGGCGGCGccGggACGUCGGc -3'
miRNA:   3'- uCuuCaCCCGCCGCuuCa-UGCAGUCc -5'
31005 5' -54 NC_006560.1 + 107112 0.69 0.857882
Target:  5'- cGgcGUGGGCuaucggcuggucGGCGucG-ACGUCAGGc -3'
miRNA:   3'- uCuuCACCCG------------CCGCuuCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 102929 0.74 0.620469
Target:  5'- cGGggGaccgGGGCGGCGGcgcGGUGCGcgcggcucacUCGGGu -3'
miRNA:   3'- -UCuuCa---CCCGCCGCU---UCAUGC----------AGUCC- -5'
31005 5' -54 NC_006560.1 + 102838 0.67 0.948677
Target:  5'- cGAGGgGGGCGGCGGuugGGgaaugGCGagcCGGGc -3'
miRNA:   3'- uCUUCaCCCGCCGCU---UCa----UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 102788 0.7 0.816617
Target:  5'- gGGggGUGGGUGGaagacgGggGUgcGCGUCGa- -3'
miRNA:   3'- -UCuuCACCCGCCg-----CuuCA--UGCAGUcc -5'
31005 5' -54 NC_006560.1 + 102169 0.7 0.825241
Target:  5'- cGGAAGUcggcgccgcGGGCGGUGAGGgggaaGUCGGcGg -3'
miRNA:   3'- -UCUUCA---------CCCGCCGCUUCaug--CAGUC-C- -5'
31005 5' -54 NC_006560.1 + 101699 0.68 0.918759
Target:  5'- aGGAAGgcgGcGGCGGCGcGGUugaccuCGUCGGc -3'
miRNA:   3'- -UCUUCa--C-CCGCCGCuUCAu-----GCAGUCc -5'
31005 5' -54 NC_006560.1 + 101361 0.68 0.912928
Target:  5'- cGAGGcacaGGGCGGCGAGGccgggaaacagcUGgGUCAGc -3'
miRNA:   3'- uCUUCa---CCCGCCGCUUC------------AUgCAGUCc -5'
31005 5' -54 NC_006560.1 + 99881 0.71 0.798868
Target:  5'- cGGggGUcGuGGCGGCGgcGgGCGgcgCGGGg -3'
miRNA:   3'- -UCuuCA-C-CCGCCGCuuCaUGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 99829 0.66 0.952828
Target:  5'- uGGuuguAGUGGGCGGCcgggauccaGAGGUAgcuccCGUCgccGGGg -3'
miRNA:   3'- -UCu---UCACCCGCCG---------CUUCAU-----GCAG---UCC- -5'
31005 5' -54 NC_006560.1 + 99280 0.7 0.841947
Target:  5'- -cGGGUGGGcCGGCGGcugGgGUCGGGg -3'
miRNA:   3'- ucUUCACCC-GCCGCUucaUgCAGUCC- -5'
31005 5' -54 NC_006560.1 + 93992 0.72 0.742246
Target:  5'- gGGAGG-GGGCcggGGCGggGgACGUCGcGGc -3'
miRNA:   3'- -UCUUCaCCCG---CCGCuuCaUGCAGU-CC- -5'
31005 5' -54 NC_006560.1 + 92975 0.74 0.599904
Target:  5'- -----cGGGCGGCGcGG-ACGUCGGGg -3'
miRNA:   3'- ucuucaCCCGCCGCuUCaUGCAGUCC- -5'
31005 5' -54 NC_006560.1 + 90460 0.68 0.894001
Target:  5'- gGGggGcGGGaCGGCGggGccgcaaagGCGgccCAGGg -3'
miRNA:   3'- -UCuuCaCCC-GCCGCuuCa-------UGCa--GUCC- -5'
31005 5' -54 NC_006560.1 + 88123 0.73 0.682116
Target:  5'- cGAAGUGGuCGGCGGAG-ACGUUgcggaAGGa -3'
miRNA:   3'- uCUUCACCcGCCGCUUCaUGCAG-----UCC- -5'
31005 5' -54 NC_006560.1 + 85556 0.71 0.780508
Target:  5'- ---cGUGGGgGGCGggGgcgGC-UCGGGg -3'
miRNA:   3'- ucuuCACCCgCCGCuuCa--UGcAGUCC- -5'
31005 5' -54 NC_006560.1 + 82622 0.67 0.944291
Target:  5'- cGGcGGcUGGGCGGCGggG-GCGUUc-- -3'
miRNA:   3'- -UCuUC-ACCCGCCGCuuCaUGCAGucc -5'
31005 5' -54 NC_006560.1 + 81432 0.66 0.956747
Target:  5'- cGGGccgGGGCGGCcccGGUcgcgGCGUCGGGc -3'
miRNA:   3'- -UCUucaCCCGCCGcu-UCA----UGCAGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.