miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31093 5' -65.8 NC_006560.1 + 30663 0.65 0.504986
Target:  5'- -cCCGCCGCCccccggccgucucgGGGCCCcccguggccccGGUgGCCc-- -3'
miRNA:   3'- gaGGCGGCGG--------------CCCGGG-----------CCAgCGGaag -5'
31093 5' -65.8 NC_006560.1 + 146905 0.65 0.50408
Target:  5'- ---gGCCGCCuGGGCCCGGgcuugacuccggGCCUg- -3'
miRNA:   3'- gaggCGGCGG-CCCGGGCCag----------CGGAag -5'
31093 5' -65.8 NC_006560.1 + 76043 0.66 0.49866
Target:  5'- gCUCCG-CGCCGa-CCCGGcCGCCg-- -3'
miRNA:   3'- -GAGGCgGCGGCccGGGCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 85234 0.66 0.49866
Target:  5'- cCUCCGUgaCGCCGGcGCCCGcGgCGCg--- -3'
miRNA:   3'- -GAGGCG--GCGGCC-CGGGC-CaGCGgaag -5'
31093 5' -65.8 NC_006560.1 + 70100 0.66 0.49866
Target:  5'- gCUCCGCC-CCGuGGCCCaGcUGCCc-- -3'
miRNA:   3'- -GAGGCGGcGGC-CCGGGcCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 142408 0.66 0.49866
Target:  5'- -cCCGCCGCgcccccggacccCGGGCCCcGcCGCCc-- -3'
miRNA:   3'- gaGGCGGCG------------GCCCGGGcCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 110478 0.66 0.49866
Target:  5'- -gCCGCCGCCGccaacuucuGCCUGGcUCGCUUc- -3'
miRNA:   3'- gaGGCGGCGGCc--------CGGGCC-AGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 6333 0.66 0.489685
Target:  5'- --aCGCCGCgCGGGCgccccgccCCGGccCGcCCUUCg -3'
miRNA:   3'- gagGCGGCG-GCCCG--------GGCCa-GC-GGAAG- -5'
31093 5' -65.8 NC_006560.1 + 145052 0.66 0.489685
Target:  5'- -gCCGCCGCCGGGCggccuccucccCUGGgcgggGCCg-- -3'
miRNA:   3'- gaGGCGGCGGCCCG-----------GGCCag---CGGaag -5'
31093 5' -65.8 NC_006560.1 + 70903 0.66 0.489685
Target:  5'- cCUCacgaGCCGCCGcGaCCUGGgCGCCUg- -3'
miRNA:   3'- -GAGg---CGGCGGCcC-GGGCCaGCGGAag -5'
31093 5' -65.8 NC_006560.1 + 3799 0.66 0.489685
Target:  5'- -gCCGCCaGcCCGGGCacggcggcgaGGUCGCCg-- -3'
miRNA:   3'- gaGGCGG-C-GGCCCGgg--------CCAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 118886 0.66 0.489685
Target:  5'- --gUGCCuCCGGGCCCuGGgcugCGCCaUCc -3'
miRNA:   3'- gagGCGGcGGCCCGGG-CCa---GCGGaAG- -5'
31093 5' -65.8 NC_006560.1 + 46592 0.66 0.489685
Target:  5'- -cCCGCCGCgGacgucccuccccGGCCCGacggCGCCUUg -3'
miRNA:   3'- gaGGCGGCGgC------------CCGGGCca--GCGGAAg -5'
31093 5' -65.8 NC_006560.1 + 6418 0.66 0.489685
Target:  5'- -gCCGCgGCC-GGCCCGccgcacaacgccGUCGCCg-- -3'
miRNA:   3'- gaGGCGgCGGcCCGGGC------------CAGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 58199 0.66 0.489685
Target:  5'- -cCCGUCGCucgagagccCGGGCuCCGGgcUCGCCg-- -3'
miRNA:   3'- gaGGCGGCG---------GCCCG-GGCC--AGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 5663 0.66 0.486116
Target:  5'- gCUCCGCC-CCGGGgCgCGGgggcggccggcggCGCCgcccgUCg -3'
miRNA:   3'- -GAGGCGGcGGCCCgG-GCCa------------GCGGa----AG- -5'
31093 5' -65.8 NC_006560.1 + 129155 0.66 0.480786
Target:  5'- cCUCCGCC-CCGacgucGGCCCGGaggagaUCGUCg-- -3'
miRNA:   3'- -GAGGCGGcGGC-----CCGGGCC------AGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 96310 0.66 0.480786
Target:  5'- -cCCGCCGCCGa--CCGG-CGCCa-- -3'
miRNA:   3'- gaGGCGGCGGCccgGGCCaGCGGaag -5'
31093 5' -65.8 NC_006560.1 + 73614 0.66 0.480786
Target:  5'- -gCCGCCGCCGaGGaCCGGgaggugcgcggCGCCc-- -3'
miRNA:   3'- gaGGCGGCGGC-CCgGGCCa----------GCGGaag -5'
31093 5' -65.8 NC_006560.1 + 83862 0.66 0.480786
Target:  5'- --gCGCCuCCGGGCCgaGGUCGUCc-- -3'
miRNA:   3'- gagGCGGcGGCCCGGg-CCAGCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.