miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 3' -52.6 NC_006560.1 + 17504 0.66 0.970828
Target:  5'- ----cUGGAGCGcGCGG-GGCCgGCGGCg -3'
miRNA:   3'- augaaACUUUGU-CGCCgUCGG-CGUCG- -5'
31115 3' -52.6 NC_006560.1 + 9881 0.66 0.970828
Target:  5'- -----cGggGgGGCGGCAcGCUGCgcgAGCa -3'
miRNA:   3'- augaaaCuuUgUCGCCGU-CGGCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 55413 0.66 0.970828
Target:  5'- gUGCUcgcGcGACAGCGGCAgGgCGgAGCg -3'
miRNA:   3'- -AUGAaa-CuUUGUCGCCGU-CgGCgUCG- -5'
31115 3' -52.6 NC_006560.1 + 37623 0.66 0.970828
Target:  5'- -----aGGggUcGCGGCAGUgGCAGUg -3'
miRNA:   3'- augaaaCUuuGuCGCCGUCGgCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 71343 0.66 0.970828
Target:  5'- gGCggggGAGGgGGCGGCGgGCgGCGGa -3'
miRNA:   3'- aUGaaa-CUUUgUCGCCGU-CGgCGUCg -5'
31115 3' -52.6 NC_006560.1 + 112865 0.66 0.970828
Target:  5'- -----cGAGcuCGGCGGcCAGgCGCAGCc -3'
miRNA:   3'- augaaaCUUu-GUCGCC-GUCgGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 75356 0.66 0.970828
Target:  5'- -----cGAcGCGGCGGCGcGCCGacgAGCu -3'
miRNA:   3'- augaaaCUuUGUCGCCGU-CGGCg--UCG- -5'
31115 3' -52.6 NC_006560.1 + 34796 0.66 0.970828
Target:  5'- gGCUgcgGGGuuccGCGGC-GCGGCCGgGGCc -3'
miRNA:   3'- aUGAaa-CUU----UGUCGcCGUCGGCgUCG- -5'
31115 3' -52.6 NC_006560.1 + 77394 0.66 0.970828
Target:  5'- cGCUgcUGAuGCGGCccgaGGCGGCgCGCGcGCg -3'
miRNA:   3'- aUGAa-ACUuUGUCG----CCGUCG-GCGU-CG- -5'
31115 3' -52.6 NC_006560.1 + 81279 0.66 0.970828
Target:  5'- cACUggcGGccCGGCGGCcgGGCCGCcGCc -3'
miRNA:   3'- aUGAaa-CUuuGUCGCCG--UCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 39636 0.66 0.970225
Target:  5'- gGCguccgGgcGCGGCGGagucuccgcucgGGCCGCGGCc -3'
miRNA:   3'- aUGaaa--CuuUGUCGCCg-----------UCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 10586 0.66 0.96992
Target:  5'- -----cGggGgGGUGGagggagacccacgaCGGCCGCAGCg -3'
miRNA:   3'- augaaaCuuUgUCGCC--------------GUCGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 58376 0.66 0.967723
Target:  5'- cGCg--GggGgAGCGGCGcCCGCgucGGCg -3'
miRNA:   3'- aUGaaaCuuUgUCGCCGUcGGCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 51361 0.66 0.967723
Target:  5'- -cCUUcGGGACGGaGGcCGGCCGCcGCg -3'
miRNA:   3'- auGAAaCUUUGUCgCC-GUCGGCGuCG- -5'
31115 3' -52.6 NC_006560.1 + 53632 0.66 0.967723
Target:  5'- gGCgcccu-GCGGCGGCucguuGCCGgGGCc -3'
miRNA:   3'- aUGaaacuuUGUCGCCGu----CGGCgUCG- -5'
31115 3' -52.6 NC_006560.1 + 81521 0.66 0.967723
Target:  5'- -cCUcUGGGuGCGGUGGCGGCgCGCcagGGCg -3'
miRNA:   3'- auGAaACUU-UGUCGCCGUCG-GCG---UCG- -5'
31115 3' -52.6 NC_006560.1 + 3241 0.66 0.967723
Target:  5'- gGCgugUGGGcgGGCccgGGCGGCgCGCGGCg -3'
miRNA:   3'- aUGaa-ACUUugUCG---CCGUCG-GCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 25063 0.66 0.9674
Target:  5'- cGCgc-GAGGCGGCcgccgccGGCGcgcccgacuuccGCCGCGGCg -3'
miRNA:   3'- aUGaaaCUUUGUCG-------CCGU------------CGGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 94968 0.66 0.965751
Target:  5'- gUGCUggcgcgcauCGGgGGCGGgCGCGGCg -3'
miRNA:   3'- -AUGAaacuuu---GUCgCCGUCgGCGUCG- -5'
31115 3' -52.6 NC_006560.1 + 118642 0.66 0.96439
Target:  5'- aACUcgGugGCGuGgGGCGGCCGCAacGCc -3'
miRNA:   3'- aUGAaaCuuUGU-CgCCGUCGGCGU--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.