miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31115 5' -63.9 NC_006560.1 + 102571 0.66 0.556172
Target:  5'- aGCGCcGcGGcCGCCGCccgGCGCCGcgccUCGAGa -3'
miRNA:   3'- -CGCGaCcCC-GCGGCG---CGCGGU----AGCUU- -5'
31115 5' -63.9 NC_006560.1 + 129901 0.66 0.556172
Target:  5'- cGCGUgGGGGCggugccugcGCaCGCGCGCgGcCGGAg -3'
miRNA:   3'- -CGCGaCCCCG---------CG-GCGCGCGgUaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 68115 0.66 0.556172
Target:  5'- aCGCgGGGGaggaCGCCGUGuUGCUGUCGGc -3'
miRNA:   3'- cGCGaCCCC----GCGGCGC-GCGGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 90639 0.66 0.556172
Target:  5'- cGCGCgGGccacggccaucGGCGCCuaccuggcGCGCGCCGcCGGc -3'
miRNA:   3'- -CGCGaCC-----------CCGCGG--------CGCGCGGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 23720 0.66 0.556172
Target:  5'- cGCGUccccGGcGGCGCCGagGcCGCCGUCGc- -3'
miRNA:   3'- -CGCGa---CC-CCGCGGCg-C-GCGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 10463 0.66 0.556172
Target:  5'- cGCGCgGGGGC-CaCGC-CGCC-UCGGGg -3'
miRNA:   3'- -CGCGaCCCCGcG-GCGcGCGGuAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 5003 0.66 0.556172
Target:  5'- gGgGC-GGGGUGcCCGuCGcCGCCGUCGu- -3'
miRNA:   3'- -CgCGaCCCCGC-GGC-GC-GCGGUAGCuu -5'
31115 5' -63.9 NC_006560.1 + 27134 0.66 0.556172
Target:  5'- cGCaGUUGGGGCccgcaccgaGCCGCGgGCCGg---- -3'
miRNA:   3'- -CG-CGACCCCG---------CGGCGCgCGGUagcuu -5'
31115 5' -63.9 NC_006560.1 + 120554 0.66 0.556172
Target:  5'- cCGCcgGGuGGCGCCucuGCGCGCUcUCGu- -3'
miRNA:   3'- cGCGa-CC-CCGCGG---CGCGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 80542 0.66 0.553291
Target:  5'- cGCGCUGGcGGUccucaucgaggccuGUCG-GCGCCuUCGAc -3'
miRNA:   3'- -CGCGACC-CCG--------------CGGCgCGCGGuAGCUu -5'
31115 5' -63.9 NC_006560.1 + 121051 0.66 0.546587
Target:  5'- gGCGaC-GGGGCaccaggaagacgGUgGCGCGCUGUCGGAa -3'
miRNA:   3'- -CGC-GaCCCCG------------CGgCGCGCGGUAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 148535 0.66 0.546587
Target:  5'- -gGCUGGGGUGCCGaugGUGUCccCGGc -3'
miRNA:   3'- cgCGACCCCGCGGCg--CGCGGuaGCUu -5'
31115 5' -63.9 NC_006560.1 + 130790 0.66 0.546587
Target:  5'- uGCGCgaGGcGGUGCUGCG-GCCG-CGGGg -3'
miRNA:   3'- -CGCGa-CC-CCGCGGCGCgCGGUaGCUU- -5'
31115 5' -63.9 NC_006560.1 + 31944 0.66 0.546587
Target:  5'- cGCGCggGGGGCgGCCGgGCGggGgcgCGAGa -3'
miRNA:   3'- -CGCGa-CCCCG-CGGCgCGCggUa--GCUU- -5'
31115 5' -63.9 NC_006560.1 + 111682 0.66 0.546587
Target:  5'- gGCGCUGgugauGGGCaagGCCGUGCggaGCC-UCGAc -3'
miRNA:   3'- -CGCGAC-----CCCG---CGGCGCG---CGGuAGCUu -5'
31115 5' -63.9 NC_006560.1 + 34603 0.66 0.546587
Target:  5'- gGgGCUccggGGGGUgGCCGCGCGgC-UCGGGg -3'
miRNA:   3'- -CgCGA----CCCCG-CGGCGCGCgGuAGCUU- -5'
31115 5' -63.9 NC_006560.1 + 3891 0.66 0.546587
Target:  5'- gGCGUcGGcGGCGUCG-GCGgCGUCGGc -3'
miRNA:   3'- -CGCGaCC-CCGCGGCgCGCgGUAGCUu -5'
31115 5' -63.9 NC_006560.1 + 111241 0.66 0.546587
Target:  5'- cGUGCUgGGGGCGUucgaGCGCGgCA-CGGc -3'
miRNA:   3'- -CGCGA-CCCCGCGg---CGCGCgGUaGCUu -5'
31115 5' -63.9 NC_006560.1 + 56442 0.66 0.546587
Target:  5'- cGCGCcGGGGUcgaggaggcgGCCcucgGCGCGCCcUCGc- -3'
miRNA:   3'- -CGCGaCCCCG----------CGG----CGCGCGGuAGCuu -5'
31115 5' -63.9 NC_006560.1 + 94955 0.66 0.545632
Target:  5'- gGCGCU---GCGCCGCGUGCuggcgcgCAUCGGGg -3'
miRNA:   3'- -CGCGAcccCGCGGCGCGCG-------GUAGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.