miRNA display CGI


Results 1 - 20 of 209 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31121 5' -63 NC_006560.1 + 130811 0.66 0.586512
Target:  5'- -cGCgggGCCacGCGCAgGCCGUgACGg -3'
miRNA:   3'- caCGa--CGGacCGCGUgCGGCGgUGCa -5'
31121 5' -63 NC_006560.1 + 49755 0.66 0.586512
Target:  5'- -cGCgGCCcacGCGCGCGaaacCCGCCGCGc -3'
miRNA:   3'- caCGaCGGac-CGCGUGC----GGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 117899 0.66 0.586512
Target:  5'- -aGCU-CgUGGCGCcgacgacgcgcuACGCCGCCgACGg -3'
miRNA:   3'- caCGAcGgACCGCG------------UGCGGCGG-UGCa -5'
31121 5' -63 NC_006560.1 + 3778 0.66 0.586512
Target:  5'- -gGCggGaCCgcGGCGCGCGCgGCCGCc- -3'
miRNA:   3'- caCGa-C-GGa-CCGCGUGCGgCGGUGca -5'
31121 5' -63 NC_006560.1 + 66992 0.66 0.586512
Target:  5'- -gGCcGUCUGGCGCgGCGUCGCgAgGg -3'
miRNA:   3'- caCGaCGGACCGCG-UGCGGCGgUgCa -5'
31121 5' -63 NC_006560.1 + 141759 0.66 0.585529
Target:  5'- -cGC-GCCcgcguUGGCGCGCggcgagaGCgGCCGCGUg -3'
miRNA:   3'- caCGaCGG-----ACCGCGUG-------CGgCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 24777 0.66 0.576696
Target:  5'- cGUGCUGCCcgccGCGCaguGCGacguccgcuggcCCGCCGCGc -3'
miRNA:   3'- -CACGACGGac--CGCG---UGC------------GGCGGUGCa -5'
31121 5' -63 NC_006560.1 + 101761 0.66 0.576696
Target:  5'- -gGCgGCCgcgucgcGGgGCACGUCGCCGgGg -3'
miRNA:   3'- caCGaCGGa------CCgCGUGCGGCGGUgCa -5'
31121 5' -63 NC_006560.1 + 111351 0.66 0.576696
Target:  5'- -gGC-GCCUGGCcacGCGCGUgGCC-CGg -3'
miRNA:   3'- caCGaCGGACCG---CGUGCGgCGGuGCa -5'
31121 5' -63 NC_006560.1 + 131197 0.66 0.576696
Target:  5'- -gGCcGCCUguccccGGCGCuGCGCCGgcCCGCGa -3'
miRNA:   3'- caCGaCGGA------CCGCG-UGCGGC--GGUGCa -5'
31121 5' -63 NC_006560.1 + 46297 0.66 0.576696
Target:  5'- -gGCU-CCUGGCGCucuGCGUCGUCgACGc -3'
miRNA:   3'- caCGAcGGACCGCG---UGCGGCGG-UGCa -5'
31121 5' -63 NC_006560.1 + 75950 0.66 0.576696
Target:  5'- cUGCgaccGCCUGGC-CGCGCUgaggGCCgACGUc -3'
miRNA:   3'- cACGa---CGGACCGcGUGCGG----CGG-UGCA- -5'
31121 5' -63 NC_006560.1 + 147662 0.66 0.576696
Target:  5'- -cGgUGCC-GGCGCGCaCCGCCuccuCGg -3'
miRNA:   3'- caCgACGGaCCGCGUGcGGCGGu---GCa -5'
31121 5' -63 NC_006560.1 + 110372 0.66 0.576696
Target:  5'- -gGCcGCCgGGCagGCGCGCCagGCCGCa- -3'
miRNA:   3'- caCGaCGGaCCG--CGUGCGG--CGGUGca -5'
31121 5' -63 NC_006560.1 + 19397 0.66 0.576696
Target:  5'- -cGCggcacggGCCgGGCGaguCGCCGCgGCGg -3'
miRNA:   3'- caCGa------CGGaCCGCgu-GCGGCGgUGCa -5'
31121 5' -63 NC_006560.1 + 25222 0.66 0.575716
Target:  5'- -cGCUGCgcgccuuCUGcGCGCGCGCCcuGCC-CGa -3'
miRNA:   3'- caCGACG-------GAC-CGCGUGCGG--CGGuGCa -5'
31121 5' -63 NC_006560.1 + 41704 0.66 0.57278
Target:  5'- -aGC-GCCgcggguccgcgugGGCGgccacgaACGCCGCCACGUc -3'
miRNA:   3'- caCGaCGGa------------CCGCg------UGCGGCGGUGCA- -5'
31121 5' -63 NC_006560.1 + 117520 0.66 0.566917
Target:  5'- -cGcCUGCCUGGC-CGCcuccgggguGCCGCUACa- -3'
miRNA:   3'- caC-GACGGACCGcGUG---------CGGCGGUGca -5'
31121 5' -63 NC_006560.1 + 51992 0.66 0.566917
Target:  5'- -gGcCUGCC-GGCGCGgugacCGCCGCCcCGc -3'
miRNA:   3'- caC-GACGGaCCGCGU-----GCGGCGGuGCa -5'
31121 5' -63 NC_006560.1 + 54635 0.66 0.566917
Target:  5'- -aGCUGCUUGGCG-ACGgCG-CGCGg -3'
miRNA:   3'- caCGACGGACCGCgUGCgGCgGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.