miRNA display CGI


Results 1 - 20 of 444 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31129 5' -63.4 NC_006560.1 + 115802 0.66 0.609219
Target:  5'- gCGCCUGCCCgUgu--ACGaGGCGCUCg -3'
miRNA:   3'- -GCGGGCGGGgGagguUGUaCCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 25735 0.66 0.609219
Target:  5'- aCGcCCCGgCCCCgCCAcagACA-GGCgcgaaGCCCg -3'
miRNA:   3'- -GC-GGGCgGGGGaGGU---UGUaCCG-----CGGG- -5'
31129 5' -63.4 NC_006560.1 + 34942 0.66 0.609219
Target:  5'- cCGCUcccgCGCCCCCggggCCcg---GGCGCCg -3'
miRNA:   3'- -GCGG----GCGGGGGa---GGuuguaCCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 54882 0.66 0.609219
Target:  5'- cCGCgagaCGCCCCCgggggCCAggggGCGguagccgaGGCGCUCg -3'
miRNA:   3'- -GCGg---GCGGGGGa----GGU----UGUa-------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 142920 0.66 0.609219
Target:  5'- -cCCCGCagCCC-CCGACAccugcgGGCGaCCCu -3'
miRNA:   3'- gcGGGCGg-GGGaGGUUGUa-----CCGC-GGG- -5'
31129 5' -63.4 NC_006560.1 + 59995 0.66 0.609219
Target:  5'- uGCCUgugcaGCCUCCUCCGG-GUGuuCGCCCa -3'
miRNA:   3'- gCGGG-----CGGGGGAGGUUgUACc-GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 150246 0.66 0.609219
Target:  5'- uGCCCGCgCUCUCg-----GGCGCCg -3'
miRNA:   3'- gCGGGCGgGGGAGguuguaCCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 46072 0.66 0.609219
Target:  5'- cCGCCCGacggCCCagcCCGAgGcGGCGCCg -3'
miRNA:   3'- -GCGGGCg---GGGga-GGUUgUaCCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 76035 0.66 0.609219
Target:  5'- aCGaCCCGgCUCCgcgCCGACccGGcCGCCg -3'
miRNA:   3'- -GC-GGGCgGGGGa--GGUUGuaCC-GCGGg -5'
31129 5' -63.4 NC_006560.1 + 91783 0.66 0.609219
Target:  5'- cCGCCaucucgGCCCCCagccUCaCGGCcgGGCagcgGCCCc -3'
miRNA:   3'- -GCGGg-----CGGGGG----AG-GUUGuaCCG----CGGG- -5'
31129 5' -63.4 NC_006560.1 + 144492 0.66 0.609219
Target:  5'- gGCCUGCCCCgUCUgcccCGcGGcCGCCUu -3'
miRNA:   3'- gCGGGCGGGGgAGGuu--GUaCC-GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 123676 0.66 0.609219
Target:  5'- gGCCCGCCCUgcgaCgcaCCcGCGUGGaucCGCCg -3'
miRNA:   3'- gCGGGCGGGG----Ga--GGuUGUACC---GCGGg -5'
31129 5' -63.4 NC_006560.1 + 66874 0.66 0.608249
Target:  5'- cCGCCCGCacgacCCCCUggacgagcacgcgCgCGGCGUgcucGGCGCCg -3'
miRNA:   3'- -GCGGGCG-----GGGGA-------------G-GUUGUA----CCGCGGg -5'
31129 5' -63.4 NC_006560.1 + 13839 0.66 0.608249
Target:  5'- gGCCCGUCgaCCCUCCuccccGCcugacucaucgggGUGGCGuuCCCg -3'
miRNA:   3'- gCGGGCGG--GGGAGGu----UG-------------UACCGC--GGG- -5'
31129 5' -63.4 NC_006560.1 + 122678 0.66 0.608249
Target:  5'- -cCCCGCCCCC-CCGcguACAUccugucccucgugGGgGUCCa -3'
miRNA:   3'- gcGGGCGGGGGaGGU---UGUA-------------CCgCGGG- -5'
31129 5' -63.4 NC_006560.1 + 70891 0.66 0.606309
Target:  5'- gGgCCGCUCCgUCCucacgagccgccgcGACcugGGCGCCUg -3'
miRNA:   3'- gCgGGCGGGGgAGG--------------UUGua-CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 103518 0.66 0.600495
Target:  5'- aCGCCgCGCCCCCagguccaccUCgCAuauuaaggugaugcGCGUGGCcucaaacaccgagcgGCCCu -3'
miRNA:   3'- -GCGG-GCGGGGG---------AG-GU--------------UGUACCG---------------CGGG- -5'
31129 5' -63.4 NC_006560.1 + 27568 0.66 0.599527
Target:  5'- gCGCCCGCCggaagcugaggCCg-CCGGCGcgcgggugGGCGCUCg -3'
miRNA:   3'- -GCGGGCGG-----------GGgaGGUUGUa-------CCGCGGG- -5'
31129 5' -63.4 NC_006560.1 + 102895 0.66 0.599527
Target:  5'- gGCCCGCguggCUCUCCGGCGcuccuCGCCCu -3'
miRNA:   3'- gCGGGCGg---GGGAGGUUGUacc--GCGGG- -5'
31129 5' -63.4 NC_006560.1 + 27113 0.66 0.599527
Target:  5'- gCGaCCCgGCCUCCaCCGagacGCAguUGGgGCCCg -3'
miRNA:   3'- -GC-GGG-CGGGGGaGGU----UGU--ACCgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.