miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31165 5' -59.3 NC_006560.1 + 85922 0.66 0.823304
Target:  5'- gCCAGCGcGGcGGC-CGCcgccgagaccGCGUCGUCGu -3'
miRNA:   3'- -GGUCGU-CCaCCGcGCGc---------UGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 146292 0.66 0.823304
Target:  5'- gCC-GCGGG-GGCGCGguCGGCGUCcaCGu -3'
miRNA:   3'- -GGuCGUCCaCCGCGC--GCUGCAGcaGC- -5'
31165 5' -59.3 NC_006560.1 + 91832 0.66 0.823304
Target:  5'- aCCGGCuucgagGGCGaCGUGGCGcgCGUCa -3'
miRNA:   3'- -GGUCGucca--CCGC-GCGCUGCa-GCAGc -5'
31165 5' -59.3 NC_006560.1 + 137891 0.66 0.823304
Target:  5'- aCAGCGcguacGUGGCcauguCGCGgaccACGUCGUCGg -3'
miRNA:   3'- gGUCGUc----CACCGc----GCGC----UGCAGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 140211 0.66 0.823304
Target:  5'- uCCAGgAGGgGGCGCcacGCGUCGcCGa -3'
miRNA:   3'- -GGUCgUCCaCCGCGcgcUGCAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 104859 0.66 0.823304
Target:  5'- gCGGUguguuuuauaaaAGGgGGCGCGCGcCGgcccccUCGUCGg -3'
miRNA:   3'- gGUCG------------UCCaCCGCGCGCuGC------AGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 20935 0.66 0.823304
Target:  5'- gCCGGC-GGcGGCG-GCGACGgCGUUu -3'
miRNA:   3'- -GGUCGuCCaCCGCgCGCUGCaGCAGc -5'
31165 5' -59.3 NC_006560.1 + 15618 0.66 0.823304
Target:  5'- uCCAGCGGG-GGCaCGCaGCGccucgCGUCc -3'
miRNA:   3'- -GGUCGUCCaCCGcGCGcUGCa----GCAGc -5'
31165 5' -59.3 NC_006560.1 + 33626 0.66 0.815012
Target:  5'- -gAGCAGGggggGGCGgGgGGCGcCGggggCGg -3'
miRNA:   3'- ggUCGUCCa---CCGCgCgCUGCaGCa---GC- -5'
31165 5' -59.3 NC_006560.1 + 112432 0.66 0.815012
Target:  5'- cCCGGCGuGGUgcaGGCcaCGUGGCG-CGUCGu -3'
miRNA:   3'- -GGUCGU-CCA---CCGc-GCGCUGCaGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 88623 0.66 0.815012
Target:  5'- uCCAGCAcGcGGgGgGCGACGaagcgaaacUCGUCGc -3'
miRNA:   3'- -GGUCGUcCaCCgCgCGCUGC---------AGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 39606 0.66 0.815012
Target:  5'- gCCGGCccGcgGaGCGcCGCGGCGggCGUCGg -3'
miRNA:   3'- -GGUCGucCa-C-CGC-GCGCUGCa-GCAGC- -5'
31165 5' -59.3 NC_006560.1 + 52250 0.66 0.814174
Target:  5'- gCCGGCGcGGcgcaccgccccgaUGcGgGCGCGGCGUCGaCGc -3'
miRNA:   3'- -GGUCGU-CC-------------AC-CgCGCGCUGCAGCaGC- -5'
31165 5' -59.3 NC_006560.1 + 3109 0.66 0.806564
Target:  5'- gCCAGCgAGGccaGCGCGCG-CGg-GUCGa -3'
miRNA:   3'- -GGUCG-UCCac-CGCGCGCuGCagCAGC- -5'
31165 5' -59.3 NC_006560.1 + 121230 0.66 0.806564
Target:  5'- uCCAGCGuaccGUGGgagcgcccgUGCGUGGCGaCGUCGa -3'
miRNA:   3'- -GGUCGUc---CACC---------GCGCGCUGCaGCAGC- -5'
31165 5' -59.3 NC_006560.1 + 107974 0.66 0.806564
Target:  5'- gCCGGggaGGGcGGCGcCGgGACGUCGgcCGg -3'
miRNA:   3'- -GGUCg--UCCaCCGC-GCgCUGCAGCa-GC- -5'
31165 5' -59.3 NC_006560.1 + 86354 0.66 0.806564
Target:  5'- gCCAGCAGcauGUcGCGCcCGAUgGUCGUCa -3'
miRNA:   3'- -GGUCGUC---CAcCGCGcGCUG-CAGCAGc -5'
31165 5' -59.3 NC_006560.1 + 104774 0.66 0.806564
Target:  5'- cCgGGCGGG-GGCGCGgGGgGgagCgGUCGg -3'
miRNA:   3'- -GgUCGUCCaCCGCGCgCUgCa--G-CAGC- -5'
31165 5' -59.3 NC_006560.1 + 82632 0.66 0.806564
Target:  5'- gCGGCGGG-GGCguucgaccGCGCGuAUGUCGccuUCGa -3'
miRNA:   3'- gGUCGUCCaCCG--------CGCGC-UGCAGC---AGC- -5'
31165 5' -59.3 NC_006560.1 + 3802 0.66 0.806564
Target:  5'- gCCAGCccGGGcacGGCG-GCGAgGUCGcCGc -3'
miRNA:   3'- -GGUCG--UCCa--CCGCgCGCUgCAGCaGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.