miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 119609 0.65 0.603577
Target:  5'- gCGGgGCcCGagggcccCGACG-GCGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGC-------GCUGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 15034 0.65 0.602613
Target:  5'- gCGGCGUcggagacUCGCGccggggggcgacgGCGuCGguGgGGGGCGg -3'
miRNA:   3'- -GCCGCG-------AGCGC-------------UGC-GUguCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 27106 0.65 0.60165
Target:  5'- gGGC-CUCGCGACccggccuccaccgaGaCGCAGUuGGGGCc -3'
miRNA:   3'- gCCGcGAGCGCUG--------------C-GUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 118569 0.65 0.600686
Target:  5'- cCGGCGCUCG-GucuCGCuggucccGCGGCaccacuacgcgaccGGGGCGc -3'
miRNA:   3'- -GCCGCGAGCgCu--GCG-------UGUCG--------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 124791 0.66 0.59876
Target:  5'- gCGGCGCUucguguucugcgagcCcgGCGACGCGCccgucGCGGGcGUGc -3'
miRNA:   3'- -GCCGCGA---------------G--CGCUGCGUGu----CGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 32701 0.66 0.59491
Target:  5'- gGGgGCUcCGCccgagGGCGCGCGGgccCGGGGUc -3'
miRNA:   3'- gCCgCGA-GCG-----CUGCGUGUC---GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 107984 0.66 0.59491
Target:  5'- gCGGCGC-CGgGACGU-CGGCcGGGUc -3'
miRNA:   3'- -GCCGCGaGCgCUGCGuGUCGcCCCGc -5'
31167 3' -63.8 NC_006560.1 + 82593 0.66 0.59491
Target:  5'- cCGGCcgcgGCUCGCcccgaggccccgGACG-GCGGCuGGGCGg -3'
miRNA:   3'- -GCCG----CGAGCG------------CUGCgUGUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2641 0.66 0.59491
Target:  5'- gCGGCGCgCGaCGACGgGCccgucGGCGggccacuccucGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCUGCgUG-----UCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 75086 0.66 0.59491
Target:  5'- uGGCcCUCgacgcccgcaggGCGAuCGCGCGGCucGGGGCc -3'
miRNA:   3'- gCCGcGAG------------CGCU-GCGUGUCG--CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 30828 0.66 0.59491
Target:  5'- aGGCcCUgGCccaGGCGCugGGCcGGGCGc -3'
miRNA:   3'- gCCGcGAgCG---CUGCGugUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26008 0.66 0.59491
Target:  5'- gGGCGC-CGUG-CGgGCcGCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCuGCgUGuCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 34496 0.66 0.593949
Target:  5'- cCGGgGgUCGCGGCuccggagGC-CGGCacGGGGCGc -3'
miRNA:   3'- -GCCgCgAGCGCUG-------CGuGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 46343 0.66 0.592026
Target:  5'- gGGUaGCUCcgcgggggacuucuGCGGCGgGC-GCGGGGCc -3'
miRNA:   3'- gCCG-CGAG--------------CGCUGCgUGuCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 65410 0.66 0.585304
Target:  5'- gGGCGCUU-CGGCGgaAC-GCGGGaGCGg -3'
miRNA:   3'- gCCGCGAGcGCUGCg-UGuCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 135053 0.66 0.585304
Target:  5'- -cGCGCUCggccaccgcgGCGACGU-CGGCgucgGGGGCGc -3'
miRNA:   3'- gcCGCGAG----------CGCUGCGuGUCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 75129 0.66 0.585304
Target:  5'- gGGgGC-CGCGGC-CGCcgaccuGGCGGcGGCGg -3'
miRNA:   3'- gCCgCGaGCGCUGcGUG------UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 113 0.66 0.585304
Target:  5'- gCGGcCGCggccggCGCGGguUugGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGa-----GCGCUgcGugUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 145824 0.66 0.585304
Target:  5'- cCGGC-CUCGCGcgGCGgGCcG-GGGGCGc -3'
miRNA:   3'- -GCCGcGAGCGC--UGCgUGuCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 142942 0.66 0.585304
Target:  5'- gGGCgacccucgaGCUCGCGAgGCGacGCGcGGGCc -3'
miRNA:   3'- gCCG---------CGAGCGCUgCGUguCGC-CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.