miRNA display CGI


Results 1 - 20 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3118 5' -52 NC_001493.1 + 115878 0.66 0.981665
Target:  5'- gUCAcCACCGGCCcgauaauccCGAGAAUgGACCg -3'
miRNA:   3'- -AGUcGUGGUCGGu--------GCUUUUGgUUGGg -5'
3118 5' -52 NC_001493.1 + 77609 0.66 0.981665
Target:  5'- gCA-CGCUGGCCACGuucacACC-ACCCa -3'
miRNA:   3'- aGUcGUGGUCGGUGCuuu--UGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 324 0.66 0.981665
Target:  5'- gUCAcCACCGGCCcgauaauccCGAGAAUgGACCg -3'
miRNA:   3'- -AGUcGUGGUCGGu--------GCUUUUGgUUGGg -5'
3118 5' -52 NC_001493.1 + 119254 0.66 0.981665
Target:  5'- cUCGGCaucuucucgACCGGUCGUGGAGAUgGACUCg -3'
miRNA:   3'- -AGUCG---------UGGUCGGUGCUUUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 93285 0.66 0.981665
Target:  5'- -aAGCuCCcguGGCCGCGGGAuaGCaCGAUCCg -3'
miRNA:   3'- agUCGuGG---UCGGUGCUUU--UG-GUUGGG- -5'
3118 5' -52 NC_001493.1 + 84623 0.66 0.981665
Target:  5'- --uGCACCAGgCA---GAACCGAUCCc -3'
miRNA:   3'- aguCGUGGUCgGUgcuUUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 3699 0.66 0.981665
Target:  5'- cUCGGCaucuucucgACCGGUCGUGGAGAUgGACUCg -3'
miRNA:   3'- -AGUCG---------UGGUCGGUGCUUUUGgUUGGG- -5'
3118 5' -52 NC_001493.1 + 8441 0.66 0.979456
Target:  5'- -uGGCGCCGcGCCGgGGcu-CCcACCCa -3'
miRNA:   3'- agUCGUGGU-CGGUgCUuuuGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 96530 0.66 0.979456
Target:  5'- gUAGUACCAucaCCgACGGuGAGCCAugCCg -3'
miRNA:   3'- aGUCGUGGUc--GG-UGCU-UUUGGUugGG- -5'
3118 5' -52 NC_001493.1 + 48345 0.66 0.979456
Target:  5'- -gAGCG-CAGCCuguCGAAc-CCGGCCCc -3'
miRNA:   3'- agUCGUgGUCGGu--GCUUuuGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 20437 0.66 0.979456
Target:  5'- uUCAuGCGCCGGUCGCGAc-ACgGugUCu -3'
miRNA:   3'- -AGU-CGUGGUCGGUGCUuuUGgUugGG- -5'
3118 5' -52 NC_001493.1 + 123995 0.66 0.979456
Target:  5'- -uGGCGCCGcGCCGgGGcu-CCcACCCa -3'
miRNA:   3'- agUCGUGGU-CGGUgCUuuuGGuUGGG- -5'
3118 5' -52 NC_001493.1 + 28865 0.66 0.979456
Target:  5'- gUCAGCGCUucaaCGCGAGccugcAACCggUCCu -3'
miRNA:   3'- -AGUCGUGGucg-GUGCUU-----UUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 91834 0.66 0.977305
Target:  5'- cCGGCGCCcaaaccaacaacacAGCCagaggagagaccaacGgGGAGACCGAUCCc -3'
miRNA:   3'- aGUCGUGG--------------UCGG---------------UgCUUUUGGUUGGG- -5'
3118 5' -52 NC_001493.1 + 63033 0.66 0.977056
Target:  5'- cCGGUACCGugaccaCCACGAcgGCgaAGCCCa -3'
miRNA:   3'- aGUCGUGGUc-----GGUGCUuuUGg-UUGGG- -5'
3118 5' -52 NC_001493.1 + 93123 0.66 0.977056
Target:  5'- aUCGuGCuauCCcgcGGCCACGGGAGCUuucGCCUa -3'
miRNA:   3'- -AGU-CGu--GG---UCGGUGCUUUUGGu--UGGG- -5'
3118 5' -52 NC_001493.1 + 20502 0.66 0.977056
Target:  5'- -gGGCAUgAGCCAUGugauAGGCC--CCCg -3'
miRNA:   3'- agUCGUGgUCGGUGCu---UUUGGuuGGG- -5'
3118 5' -52 NC_001493.1 + 30778 0.66 0.977056
Target:  5'- aCGGCACgAggggcguuGCCGgGAGcGCCAcCCCg -3'
miRNA:   3'- aGUCGUGgU--------CGGUgCUUuUGGUuGGG- -5'
3118 5' -52 NC_001493.1 + 19229 0.66 0.977056
Target:  5'- aUCGGCAUCgAGaUCAuCGAGAACCGuaACCa -3'
miRNA:   3'- -AGUCGUGG-UC-GGU-GCUUUUGGU--UGGg -5'
3118 5' -52 NC_001493.1 + 20898 0.66 0.977056
Target:  5'- -gGGgAUCcccgguGCCGCGGGAGCguACCCg -3'
miRNA:   3'- agUCgUGGu-----CGGUGCUUUUGguUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.