miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31186 3' -61.6 NC_006560.1 + 38480 0.66 0.663768
Target:  5'- --aGCCCCGCCa-UGCAgGCGC-CGGGg -3'
miRNA:   3'- uagUGGGGCGGcaGCGU-CGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 54853 0.66 0.663768
Target:  5'- -cCACgCCGCCGcCGggaGGCGCcCGGGa -3'
miRNA:   3'- uaGUGgGGCGGCaGCg--UCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 138564 0.66 0.663768
Target:  5'- -cCcCCCCGCCGUCuccccgGCgAGCGCggagaCGGGg -3'
miRNA:   3'- uaGuGGGGCGGCAG------CG-UCGCGa----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 11533 0.66 0.663768
Target:  5'- -aC-CCCCGCCGggggUCGCGGgG-UCGGGg -3'
miRNA:   3'- uaGuGGGGCGGC----AGCGUCgCgAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 83610 0.66 0.663768
Target:  5'- --gGCCCCGCCuccgCGCGGCgGCg-GAGg -3'
miRNA:   3'- uagUGGGGCGGca--GCGUCG-CGagCUC- -5'
31186 3' -61.6 NC_006560.1 + 68747 0.66 0.663768
Target:  5'- cUCACCCCGCUGaCGCGGgcccUGUUCa-- -3'
miRNA:   3'- uAGUGGGGCGGCaGCGUC----GCGAGcuc -5'
31186 3' -61.6 NC_006560.1 + 141463 0.66 0.663768
Target:  5'- cAUC-CCCUGCCGUUuCuGaguaGCUCGAGg -3'
miRNA:   3'- -UAGuGGGGCGGCAGcGuCg---CGAGCUC- -5'
31186 3' -61.6 NC_006560.1 + 53473 0.66 0.663768
Target:  5'- -cCGCCCgagGCCG-CgGCGGCGCgCGAGg -3'
miRNA:   3'- uaGUGGGg--CGGCaG-CGUCGCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 82265 0.66 0.663768
Target:  5'- cGUCugUCCGCgGUCGguG-GCggCGGGg -3'
miRNA:   3'- -UAGugGGGCGgCAGCguCgCGa-GCUC- -5'
31186 3' -61.6 NC_006560.1 + 90307 0.66 0.653882
Target:  5'- --gGgCCCGUCGcCGUGGCGCUcCGGGc -3'
miRNA:   3'- uagUgGGGCGGCaGCGUCGCGA-GCUC- -5'
31186 3' -61.6 NC_006560.1 + 147201 0.66 0.653882
Target:  5'- cUC-CCCCGCCGgaggCGCggGGgGC-CGGGg -3'
miRNA:   3'- uAGuGGGGCGGCa---GCG--UCgCGaGCUC- -5'
31186 3' -61.6 NC_006560.1 + 109760 0.66 0.653882
Target:  5'- -aCACUCgGCCG-CGCAGcCGCccCGGGg -3'
miRNA:   3'- uaGUGGGgCGGCaGCGUC-GCGa-GCUC- -5'
31186 3' -61.6 NC_006560.1 + 26381 0.66 0.653882
Target:  5'- -gCGCCCCgGCCGgggCGCaggGGCGCgccccCGGGc -3'
miRNA:   3'- uaGUGGGG-CGGCa--GCG---UCGCGa----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 23612 0.66 0.653882
Target:  5'- ---gUCCCGCCG-CGCGGCGC-CGc- -3'
miRNA:   3'- uaguGGGGCGGCaGCGUCGCGaGCuc -5'
31186 3' -61.6 NC_006560.1 + 29443 0.66 0.653882
Target:  5'- --gGCCCCGCgcuacuccgCGUcCGCAGCcGCcgUCGAGg -3'
miRNA:   3'- uagUGGGGCG---------GCA-GCGUCG-CG--AGCUC- -5'
31186 3' -61.6 NC_006560.1 + 120724 0.66 0.653882
Target:  5'- --aGCCCCGUCGgugcgcgCGCAGUGUuuuccgCGAGu -3'
miRNA:   3'- uagUGGGGCGGCa------GCGUCGCGa-----GCUC- -5'
31186 3' -61.6 NC_006560.1 + 89713 0.66 0.653882
Target:  5'- gGUCGCgCCGCuCGUCGUcGgGCUCa-- -3'
miRNA:   3'- -UAGUGgGGCG-GCAGCGuCgCGAGcuc -5'
31186 3' -61.6 NC_006560.1 + 22182 0.66 0.653882
Target:  5'- cUguCCCCGCCGUCGgGGcCGC-CGu- -3'
miRNA:   3'- uAguGGGGCGGCAGCgUC-GCGaGCuc -5'
31186 3' -61.6 NC_006560.1 + 107447 0.66 0.647942
Target:  5'- -aCACCCUGCCccUCGCgaccgucggcccgggGGCGCUCGc- -3'
miRNA:   3'- uaGUGGGGCGGc-AGCG---------------UCGCGAGCuc -5'
31186 3' -61.6 NC_006560.1 + 142703 0.66 0.64398
Target:  5'- -gCGCCCgGCCGgcCGCGGC-CcCGAGg -3'
miRNA:   3'- uaGUGGGgCGGCa-GCGUCGcGaGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.