miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31195 5' -56.1 NC_006560.1 + 2194 0.66 0.899472
Target:  5'- cCCGGCgcgcGCGGCCGcGCGguccAGcGCCAGguAGa -3'
miRNA:   3'- -GGUCG----UGUCGGU-CGC----UC-CGGUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 72234 0.66 0.899472
Target:  5'- gCC-GC-CGGUCGGCGAGGggggCGGAGGGa -3'
miRNA:   3'- -GGuCGuGUCGGUCGCUCCg---GUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 14695 0.66 0.899472
Target:  5'- gCCAgGCugAGCaggaagaugaAGuCGAGGCCGGGcGAGg -3'
miRNA:   3'- -GGU-CGugUCGg---------UC-GCUCCGGUCU-UUC- -5'
31195 5' -56.1 NC_006560.1 + 97374 0.66 0.899472
Target:  5'- gCAGacgcgGCGGCCGGcCGGGGgcgaccCCGGGGAGg -3'
miRNA:   3'- gGUCg----UGUCGGUC-GCUCC------GGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 17076 0.66 0.899472
Target:  5'- gCAGCugGcgggcgaccGCCGugaccugcGCGAGGCuCAGggGGc -3'
miRNA:   3'- gGUCGugU---------CGGU--------CGCUCCG-GUCuuUC- -5'
31195 5' -56.1 NC_006560.1 + 26225 0.66 0.899472
Target:  5'- cCCGGC-C-GCCaggaaccccggaGGCcGGGCCGGAGGGg -3'
miRNA:   3'- -GGUCGuGuCGG------------UCGcUCCGGUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 121724 0.66 0.899472
Target:  5'- uCCGGCggGCAGcCCGGCGGGGgCGu---- -3'
miRNA:   3'- -GGUCG--UGUC-GGUCGCUCCgGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 36099 0.66 0.899472
Target:  5'- cCCGGCGgGGCCgcGGCGGGcaCCGGGGc- -3'
miRNA:   3'- -GGUCGUgUCGG--UCGCUCc-GGUCUUuc -5'
31195 5' -56.1 NC_006560.1 + 35666 0.66 0.899472
Target:  5'- cCCGGgaggaGgGGCC-GCGGGGCgGGGGAGc -3'
miRNA:   3'- -GGUCg----UgUCGGuCGCUCCGgUCUUUC- -5'
31195 5' -56.1 NC_006560.1 + 43711 0.66 0.899472
Target:  5'- aCCAGCG-AGCgCAGCGAcucGCCGGGc-- -3'
miRNA:   3'- -GGUCGUgUCG-GUCGCUc--CGGUCUuuc -5'
31195 5' -56.1 NC_006560.1 + 99650 0.66 0.89752
Target:  5'- aCCAGCGCGGCgAucuGCGccuccaggggacugGGGcCCGGAAAc -3'
miRNA:   3'- -GGUCGUGUCGgU---CGC--------------UCC-GGUCUUUc -5'
31195 5' -56.1 NC_006560.1 + 33588 0.66 0.892883
Target:  5'- gCCGcCGgAGCCAGgcaGGGGCCGGcGGAGa -3'
miRNA:   3'- -GGUcGUgUCGGUCg--CUCCGGUC-UUUC- -5'
31195 5' -56.1 NC_006560.1 + 43010 0.66 0.892883
Target:  5'- gCAGCACGGCCucccGCGGcGCCAc---- -3'
miRNA:   3'- gGUCGUGUCGGu---CGCUcCGGUcuuuc -5'
31195 5' -56.1 NC_006560.1 + 26378 0.66 0.892883
Target:  5'- aCGGCGCc-CCGGcCGGGGCgCAGggGc -3'
miRNA:   3'- gGUCGUGucGGUC-GCUCCG-GUCuuUc -5'
31195 5' -56.1 NC_006560.1 + 90461 0.66 0.892883
Target:  5'- -gGGgGCGGgaCGGCGGGGCCGcAAAGg -3'
miRNA:   3'- ggUCgUGUCg-GUCGCUCCGGUcUUUC- -5'
31195 5' -56.1 NC_006560.1 + 56965 0.66 0.892883
Target:  5'- cCCAGCAUggcguacagGGCCGGCccgGGGGCgaAGAAc- -3'
miRNA:   3'- -GGUCGUG---------UCGGUCG---CUCCGg-UCUUuc -5'
31195 5' -56.1 NC_006560.1 + 59948 0.66 0.890861
Target:  5'- aCCAGCGCcGCuaccccacguacgaCAGgGAGGCCAuGAc-- -3'
miRNA:   3'- -GGUCGUGuCG--------------GUCgCUCCGGU-CUuuc -5'
31195 5' -56.1 NC_006560.1 + 43642 0.66 0.888819
Target:  5'- gCCAGCACGcgcGCCucguggugcacgaagAGCGuGGUCAGGc-- -3'
miRNA:   3'- -GGUCGUGU---CGG---------------UCGCuCCGGUCUuuc -5'
31195 5' -56.1 NC_006560.1 + 131157 0.66 0.886063
Target:  5'- cCCcGCGCGGCUcugGGCGGcGGCCGccgcGggGGc -3'
miRNA:   3'- -GGuCGUGUCGG---UCGCU-CCGGU----CuuUC- -5'
31195 5' -56.1 NC_006560.1 + 100821 0.66 0.886063
Target:  5'- aUAGCGCGGgC-GCGGGGgCCGGcGGAGg -3'
miRNA:   3'- gGUCGUGUCgGuCGCUCC-GGUC-UUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.