miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3121 5' -62.5 NC_001493.1 + 15156 0.66 0.623832
Target:  5'- --cACCCGCggCCUCGaucgCACCCCCGaGCu -3'
miRNA:   3'- gucUGGGUG--GGAGCg---GUGGGGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 44396 0.66 0.623832
Target:  5'- gAGGUCaCACgCCUCGUC-CgCCCGCGCg -3'
miRNA:   3'- gUCUGG-GUG-GGAGCGGuGgGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 119169 0.66 0.623832
Target:  5'- aAGACCC------GCCGCCCCCGCGa -3'
miRNA:   3'- gUCUGGGugggagCGGUGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 79922 0.66 0.623832
Target:  5'- gGGGCUCGCCUUgaacCGCCAgUCCC-CGUu -3'
miRNA:   3'- gUCUGGGUGGGA----GCGGUgGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 130710 0.66 0.623832
Target:  5'- --cACCCGCggCCUCGaucgCACCCCCGaGCu -3'
miRNA:   3'- gucUGGGUG--GGAGCg---GUGGGGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 87957 0.66 0.623832
Target:  5'- cCGGAUCUACCC-CGggacCUGCCCCCcgggGCGUa -3'
miRNA:   3'- -GUCUGGGUGGGaGC----GGUGGGGG----UGCG- -5'
3121 5' -62.5 NC_001493.1 + 49624 0.66 0.623832
Target:  5'- -uGAUCCGCagCCUCGCaggUCCCCuCGCa -3'
miRNA:   3'- guCUGGGUG--GGAGCGgu-GGGGGuGCG- -5'
3121 5' -62.5 NC_001493.1 + 3615 0.66 0.623832
Target:  5'- aAGACCC------GCCGCCCCCGCGa -3'
miRNA:   3'- gUCUGGGugggagCGGUGGGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 108979 0.66 0.613997
Target:  5'- uGGAUUCACCgggUCGCCAucucUCCCCGUGCg -3'
miRNA:   3'- gUCUGGGUGGg--AGCGGU----GGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 70874 0.66 0.613997
Target:  5'- cCGGuCCauCGCCCUCGCuguaCACgCCCUugGUa -3'
miRNA:   3'- -GUCuGG--GUGGGAGCG----GUG-GGGGugCG- -5'
3121 5' -62.5 NC_001493.1 + 101234 0.66 0.594374
Target:  5'- aUAGACaCACCCgggaUGCUcgAUUCCCACGCu -3'
miRNA:   3'- -GUCUGgGUGGGa---GCGG--UGGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 40692 0.66 0.584598
Target:  5'- -cGAUaCCACCacaUCGUCGCCCCCcauACGa -3'
miRNA:   3'- guCUG-GGUGGg--AGCGGUGGGGG---UGCg -5'
3121 5' -62.5 NC_001493.1 + 131242 0.66 0.574853
Target:  5'- gAGACCC-UCCggGCCACCUUCGauaGCa -3'
miRNA:   3'- gUCUGGGuGGGagCGGUGGGGGUg--CG- -5'
3121 5' -62.5 NC_001493.1 + 35841 0.66 0.574853
Target:  5'- aAGACCC-CUCUCGCUGCggcgcucgucuuCUCCACGa -3'
miRNA:   3'- gUCUGGGuGGGAGCGGUG------------GGGGUGCg -5'
3121 5' -62.5 NC_001493.1 + 30520 0.66 0.574853
Target:  5'- -cGAUCC-CCCUUGCCgucaACgCCCCGucCGCg -3'
miRNA:   3'- guCUGGGuGGGAGCGG----UG-GGGGU--GCG- -5'
3121 5' -62.5 NC_001493.1 + 102390 0.66 0.574853
Target:  5'- aGGGCCCGCgCCggUCGaaggaaCCGCCCCCGuaccCGUg -3'
miRNA:   3'- gUCUGGGUG-GG--AGC------GGUGGGGGU----GCG- -5'
3121 5' -62.5 NC_001493.1 + 112872 0.66 0.574853
Target:  5'- gAGACCCaucgagaaGCCCcgggaUCGCCcguuCCUCCAgGCc -3'
miRNA:   3'- gUCUGGG--------UGGG-----AGCGGu---GGGGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 77519 0.67 0.565146
Target:  5'- aAGACCCugCCaUgGCCAUgUUCAgGCg -3'
miRNA:   3'- gUCUGGGugGG-AgCGGUGgGGGUgCG- -5'
3121 5' -62.5 NC_001493.1 + 97611 0.67 0.565146
Target:  5'- --uGCCCAUgCUcCGCaguguuCugCCCCACGCa -3'
miRNA:   3'- gucUGGGUGgGA-GCG------GugGGGGUGCG- -5'
3121 5' -62.5 NC_001493.1 + 36581 0.67 0.555482
Target:  5'- uCAGcUCCGCCUUCaggucaCCGCCUCCACuGCg -3'
miRNA:   3'- -GUCuGGGUGGGAGc-----GGUGGGGGUG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.