miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31213 3' -60 NC_006560.1 + 134824 0.66 0.799956
Target:  5'- gCCAgGUCCCGgGGCaggGCGUGGcccgcgaggaACGCCu -3'
miRNA:   3'- -GGUaCGGGGUgCUG---CGCACC----------UGCGGc -5'
31213 3' -60 NC_006560.1 + 117951 0.66 0.799956
Target:  5'- gCUGUGCCgCCACuucugccgguACGUGUGG-CGCCu -3'
miRNA:   3'- -GGUACGG-GGUGc---------UGCGCACCuGCGGc -5'
31213 3' -60 NC_006560.1 + 20660 0.66 0.799956
Target:  5'- aCGUGUCCU---GCGCGgagGGGCGCgGg -3'
miRNA:   3'- gGUACGGGGugcUGCGCa--CCUGCGgC- -5'
31213 3' -60 NC_006560.1 + 139384 0.66 0.799956
Target:  5'- cCCAc-CCCCAgGAgGCGaGGACGgCGa -3'
miRNA:   3'- -GGUacGGGGUgCUgCGCaCCUGCgGC- -5'
31213 3' -60 NC_006560.1 + 110413 0.66 0.799956
Target:  5'- cCCAcGCCCUggggACGGCcuGCG-GGGcCGCCGc -3'
miRNA:   3'- -GGUaCGGGG----UGCUG--CGCaCCU-GCGGC- -5'
31213 3' -60 NC_006560.1 + 23159 0.66 0.799956
Target:  5'- gCCGUGCCgcaCCugGgcuACGCcaUGGcCGCCGg -3'
miRNA:   3'- -GGUACGG---GGugC---UGCGc-ACCuGCGGC- -5'
31213 3' -60 NC_006560.1 + 30825 0.66 0.799956
Target:  5'- cCCAgGCCCUggcccaGGCGCuGggccGGGCGCCGc -3'
miRNA:   3'- -GGUaCGGGGug----CUGCG-Ca---CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 117550 0.66 0.799956
Target:  5'- aCAcGCCCUgACGGCGgGcGG-CGCCGc -3'
miRNA:   3'- gGUaCGGGG-UGCUGCgCaCCuGCGGC- -5'
31213 3' -60 NC_006560.1 + 12939 0.66 0.799956
Target:  5'- gCAUGCUguagacggCCACGACGCGcUGGuuCuCCGg -3'
miRNA:   3'- gGUACGG--------GGUGCUGCGC-ACCu-GcGGC- -5'
31213 3' -60 NC_006560.1 + 111849 0.66 0.799096
Target:  5'- -gGUGUUCCugGaggcccuggagaaGCGCGUGuACGCCGc -3'
miRNA:   3'- ggUACGGGGugC-------------UGCGCACcUGCGGC- -5'
31213 3' -60 NC_006560.1 + 138488 0.66 0.799096
Target:  5'- gCA-GCCCCcccgaggGCGAgGcCG-GGGCGCCGc -3'
miRNA:   3'- gGUaCGGGG-------UGCUgC-GCaCCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 118806 0.66 0.791296
Target:  5'- cCCcUGCgCCACG-CGCGgcccguccuGGCGCCGu -3'
miRNA:   3'- -GGuACGgGGUGCuGCGCac-------CUGCGGC- -5'
31213 3' -60 NC_006560.1 + 29803 0.66 0.791296
Target:  5'- cCCccGCCCCGCGAgGUcu--GCGCCGu -3'
miRNA:   3'- -GGuaCGGGGUGCUgCGcaccUGCGGC- -5'
31213 3' -60 NC_006560.1 + 144334 0.66 0.791296
Target:  5'- uCCGcgGCCCCGCcgcgGGCGCGa-GACgGCCGc -3'
miRNA:   3'- -GGUa-CGGGGUG----CUGCGCacCUG-CGGC- -5'
31213 3' -60 NC_006560.1 + 133825 0.66 0.791296
Target:  5'- cUCGUGCuCCCAgaGGCGCGaGaGGCGCUc -3'
miRNA:   3'- -GGUACG-GGGUg-CUGCGCaC-CUGCGGc -5'
31213 3' -60 NC_006560.1 + 78358 0.66 0.791296
Target:  5'- cCCGa-CCCCGCGGCGCGcgugacggucaUGGAC-CUGg -3'
miRNA:   3'- -GGUacGGGGUGCUGCGC-----------ACCUGcGGC- -5'
31213 3' -60 NC_006560.1 + 486 0.66 0.791296
Target:  5'- uCCcgGCCCCcguCGGucucgcucuccCGCcacGGGCGCCGg -3'
miRNA:   3'- -GGuaCGGGGu--GCU-----------GCGca-CCUGCGGC- -5'
31213 3' -60 NC_006560.1 + 122640 0.66 0.791296
Target:  5'- ---cGCCCCuGCGGCccGCGgGGGgGCCGc -3'
miRNA:   3'- gguaCGGGG-UGCUG--CGCaCCUgCGGC- -5'
31213 3' -60 NC_006560.1 + 33776 0.66 0.791296
Target:  5'- ---cGCCUCGCGGgGcCGUgGGGCGCgCGa -3'
miRNA:   3'- gguaCGGGGUGCUgC-GCA-CCUGCG-GC- -5'
31213 3' -60 NC_006560.1 + 45180 0.66 0.791296
Target:  5'- cCCGUGCCCCguucgcuggGCGGgGCuucGGCGUCGa -3'
miRNA:   3'- -GGUACGGGG---------UGCUgCGcacCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.