miRNA display CGI


Results 1 - 20 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31239 3' -68 NC_006560.1 + 150188 0.67 0.375406
Target:  5'- -aCCgacGGCGGccgagagugaGGGUgGCGAGCgCGCGGa -3'
miRNA:   3'- ggGGa--CCGCC----------CCCG-CGCUCGgGCGCC- -5'
31239 3' -68 NC_006560.1 + 149899 0.67 0.35421
Target:  5'- gCCCCgcgcgccgaaggaacGGCGGccGGGCGCGGcGUCgGUGGc -3'
miRNA:   3'- -GGGGa--------------CCGCC--CCCGCGCU-CGGgCGCC- -5'
31239 3' -68 NC_006560.1 + 149842 0.68 0.332501
Target:  5'- gCCCCcGGCcGcGGGCGgGAGaCCCcCGGc -3'
miRNA:   3'- -GGGGaCCGcC-CCCGCgCUC-GGGcGCC- -5'
31239 3' -68 NC_006560.1 + 149797 0.7 0.235635
Target:  5'- aCCCCcGGUccgacgugcgcaaGGGGGgGCGgaggcGGCCuCGCGGc -3'
miRNA:   3'- -GGGGaCCG-------------CCCCCgCGC-----UCGG-GCGCC- -5'
31239 3' -68 NC_006560.1 + 149761 0.71 0.20194
Target:  5'- cCCCCgggGcGCGGGGGCGuCGAggcGCCaCGCc- -3'
miRNA:   3'- -GGGGa--C-CGCCCCCGC-GCU---CGG-GCGcc -5'
31239 3' -68 NC_006560.1 + 149199 0.76 0.088669
Target:  5'- aCCgCCaUGGCggcgaGGGGGCGCG-GCCCGgGGc -3'
miRNA:   3'- -GG-GG-ACCG-----CCCCCGCGCuCGGGCgCC- -5'
31239 3' -68 NC_006560.1 + 148951 0.71 0.201484
Target:  5'- cCCCCgacggGGCGGGacgcgguGGCGCGAccaaCCgGCGGc -3'
miRNA:   3'- -GGGGa----CCGCCC-------CCGCGCUc---GGgCGCC- -5'
31239 3' -68 NC_006560.1 + 148762 0.69 0.269239
Target:  5'- gCCCCgacgGGCgccauguuggaGGGGGCggGCGGGCCgGCc- -3'
miRNA:   3'- -GGGGa---CCG-----------CCCCCG--CGCUCGGgCGcc -5'
31239 3' -68 NC_006560.1 + 148242 0.67 0.382912
Target:  5'- cCCCCUcgacGGCGGcugcggacgcGGaguaGCGCGGGgCCGCGa -3'
miRNA:   3'- -GGGGA----CCGCC----------CC----CGCGCUCgGGCGCc -5'
31239 3' -68 NC_006560.1 + 147944 0.68 0.332501
Target:  5'- cCCCCgGGaGGcGGGCcCGGGCUCGCa- -3'
miRNA:   3'- -GGGGaCCgCC-CCCGcGCUCGGGCGcc -5'
31239 3' -68 NC_006560.1 + 147906 0.82 0.031495
Target:  5'- aCCUCgcggGGCGGGGGCGgGggagagggGGCCCGCGGc -3'
miRNA:   3'- -GGGGa---CCGCCCCCGCgC--------UCGGGCGCC- -5'
31239 3' -68 NC_006560.1 + 147271 0.71 0.20842
Target:  5'- uCCUCUGGCggccggggccgggcgGGGGGCucugGCGGGCgCCggGCGGa -3'
miRNA:   3'- -GGGGACCG---------------CCCCCG----CGCUCG-GG--CGCC- -5'
31239 3' -68 NC_006560.1 + 147102 0.7 0.257814
Target:  5'- ----cGGCGGGGG-GCGGGCgCGCGa -3'
miRNA:   3'- ggggaCCGCCCCCgCGCUCGgGCGCc -5'
31239 3' -68 NC_006560.1 + 147036 0.67 0.387463
Target:  5'- gCCCCgagacggccggggGGCGGcggggggaggcGGGCgGCGAGUCgGCGa -3'
miRNA:   3'- -GGGGa------------CCGCC-----------CCCG-CGCUCGGgCGCc -5'
31239 3' -68 NC_006560.1 + 146951 0.7 0.230986
Target:  5'- gCCUgcgucagGGcCGGGGGC-CGGGCCUggGCGGg -3'
miRNA:   3'- gGGGa------CC-GCCCCCGcGCUCGGG--CGCC- -5'
31239 3' -68 NC_006560.1 + 146816 0.69 0.275103
Target:  5'- gCCCggGGCGGggucuGGGUGUGGGCgugCUGCGGc -3'
miRNA:   3'- gGGGa-CCGCC-----CCCGCGCUCG---GGCGCC- -5'
31239 3' -68 NC_006560.1 + 146518 0.67 0.344283
Target:  5'- gCgCCgGGCgggccggcgcgucgGGGGGCGCGggcagcgaGGCCCGCuuGGg -3'
miRNA:   3'- -GgGGaCCG--------------CCCCCGCGC--------UCGGGCG--CC- -5'
31239 3' -68 NC_006560.1 + 146389 0.67 0.390516
Target:  5'- cUCUCUcGGCaGGGGGCG-GAG-CgGCGGg -3'
miRNA:   3'- -GGGGA-CCG-CCCCCGCgCUCgGgCGCC- -5'
31239 3' -68 NC_006560.1 + 146348 0.69 0.281069
Target:  5'- cCCCCgcucggcggGGCGGGGGC-CGAGggaggaUCCGUGu -3'
miRNA:   3'- -GGGGa--------CCGCCCCCGcGCUC------GGGCGCc -5'
31239 3' -68 NC_006560.1 + 146290 0.66 0.446411
Target:  5'- aCgCC--GCGGGGGCGCG-GUCgGCGu -3'
miRNA:   3'- -GgGGacCGCCCCCGCGCuCGGgCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.