miRNA display CGI


Results 1 - 20 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31247 3' -54.8 NC_006560.1 + 74888 0.66 0.958159
Target:  5'- cCGAGGccaucaacgccGGCGGcgCGGCcGUcGCGACGGCc -3'
miRNA:   3'- -GCUCU-----------CCGCUa-GCCGcUA-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 22360 0.66 0.958159
Target:  5'- -aGGAGGaCGA-CGGCG--GCGACGGg -3'
miRNA:   3'- gcUCUCC-GCUaGCCGCuaUGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 2896 0.66 0.958159
Target:  5'- gGAGAGGCcgccgcGcgCGGCGGUccaGGCGGg -3'
miRNA:   3'- gCUCUCCG------CuaGCCGCUAug-CUGCUg -5'
31247 3' -54.8 NC_006560.1 + 65078 0.66 0.958159
Target:  5'- cCGAuGGGuCGGUCuGCGuUGCGAuCGACa -3'
miRNA:   3'- -GCUcUCC-GCUAGcCGCuAUGCU-GCUG- -5'
31247 3' -54.8 NC_006560.1 + 4732 0.66 0.958159
Target:  5'- -cGGcGGCGAcgcccgucUCGGCGGcggcccGCGGCGGCg -3'
miRNA:   3'- gcUCuCCGCU--------AGCCGCUa-----UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 117986 0.66 0.958159
Target:  5'- ---uGGGCGcggCGGCGcccGCGGCGGCg -3'
miRNA:   3'- gcucUCCGCua-GCCGCua-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 108510 0.66 0.958159
Target:  5'- gGGGAGgGCGGccggCGGCGGgccCGGgGGCg -3'
miRNA:   3'- gCUCUC-CGCUa---GCCGCUau-GCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 99248 0.66 0.954368
Target:  5'- aGGGGGGCG-UUGGCcgGAgucGCGuACGGCu -3'
miRNA:   3'- gCUCUCCGCuAGCCG--CUa--UGC-UGCUG- -5'
31247 3' -54.8 NC_006560.1 + 62752 0.66 0.954368
Target:  5'- -aGGGGGUGGUccgCGGCGAgGC-ACGGCa -3'
miRNA:   3'- gcUCUCCGCUA---GCCGCUaUGcUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 39311 0.66 0.954368
Target:  5'- cCGGGccGGGCGG--GGCGGUGgGGCGGg -3'
miRNA:   3'- -GCUC--UCCGCUagCCGCUAUgCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 138830 0.66 0.954368
Target:  5'- --cGGGGCGAUgacguugucgCGGUGG-ACGugGACc -3'
miRNA:   3'- gcuCUCCGCUA----------GCCGCUaUGCugCUG- -5'
31247 3' -54.8 NC_006560.1 + 61862 0.66 0.954368
Target:  5'- aGGuAGGCGAUgGcGCGAaggagGCGGCGAa -3'
miRNA:   3'- gCUcUCCGCUAgC-CGCUa----UGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 26680 0.66 0.954368
Target:  5'- gCGGGGGGgGA-CGGgGcccGCGACGAg -3'
miRNA:   3'- -GCUCUCCgCUaGCCgCua-UGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 41146 0.66 0.954368
Target:  5'- aGGGAGcGCa--CGGCGAgcAUGGCGGCg -3'
miRNA:   3'- gCUCUC-CGcuaGCCGCUa-UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 109173 0.66 0.954368
Target:  5'- cCGGGccGGCGGUCGcGUGG-GCGGCaGACg -3'
miRNA:   3'- -GCUCu-CCGCUAGC-CGCUaUGCUG-CUG- -5'
31247 3' -54.8 NC_006560.1 + 90114 0.66 0.954368
Target:  5'- uGAcGAGGUGAcggUCGGCGGggACGccgucCGGCg -3'
miRNA:   3'- gCU-CUCCGCU---AGCCGCUa-UGCu----GCUG- -5'
31247 3' -54.8 NC_006560.1 + 26077 0.66 0.954368
Target:  5'- gCGGGcggaacccGGGCGGccCGGCGcgGCGGgGGCu -3'
miRNA:   3'- -GCUC--------UCCGCUa-GCCGCuaUGCUgCUG- -5'
31247 3' -54.8 NC_006560.1 + 142957 0.66 0.950351
Target:  5'- uCGcGAGGCGA-CGcGCGGgccgccGCGGCGAg -3'
miRNA:   3'- -GCuCUCCGCUaGC-CGCUa-----UGCUGCUg -5'
31247 3' -54.8 NC_006560.1 + 130296 0.66 0.950351
Target:  5'- gCGAGAucucGGCcgcCGGCGcggugGCGGCGGCg -3'
miRNA:   3'- -GCUCU----CCGcuaGCCGCua---UGCUGCUG- -5'
31247 3' -54.8 NC_006560.1 + 22915 0.66 0.950351
Target:  5'- -cGGAGGCGcgcCGGCGcUACGAggccgcCGGCg -3'
miRNA:   3'- gcUCUCCGCua-GCCGCuAUGCU------GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.