miRNA display CGI


Results 1 - 20 of 141 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 3' -54.3 NC_006560.1 + 35666 0.66 0.962104
Target:  5'- cCCGg--GAGGAgGgGCCgcggGGCgggggaGCCGGGg -3'
miRNA:   3'- -GGUaaaCUUCUgU-CGGa---CCG------CGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 81428 0.66 0.962104
Target:  5'- cCCGcg-GGccgGGGCGGCCccggucgcGGCGUCGGGc -3'
miRNA:   3'- -GGUaaaCU---UCUGUCGGa-------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 149826 0.66 0.962104
Target:  5'- -----cGGAGGCGGCCUcgcGGCccccgGCCGcGGg -3'
miRNA:   3'- gguaaaCUUCUGUCGGA---CCG-----CGGC-CC- -5'
31249 3' -54.3 NC_006560.1 + 81218 0.66 0.962104
Target:  5'- aCCGggagGAGGACGGC--GGCGgaGGGg -3'
miRNA:   3'- -GGUaaa-CUUCUGUCGgaCCGCggCCC- -5'
31249 3' -54.3 NC_006560.1 + 93985 0.66 0.962104
Target:  5'- gCGUUcggGGAGGgGGCC-GGgGCgGGGg -3'
miRNA:   3'- gGUAAa--CUUCUgUCGGaCCgCGgCCC- -5'
31249 3' -54.3 NC_006560.1 + 100388 0.66 0.962104
Target:  5'- gCAgggugUUGucGGGC-GCCUcgcccuccuccaGGCGCCGGGu -3'
miRNA:   3'- gGUa----AACu-UCUGuCGGA------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 108978 0.66 0.962104
Target:  5'- gCGgcgUUGAcGACgucGGCCUcGGCGCCGa- -3'
miRNA:   3'- gGUa--AACUuCUG---UCGGA-CCGCGGCcc -5'
31249 3' -54.3 NC_006560.1 + 42912 0.66 0.962104
Target:  5'- -----cGggGACgAGUCgacGGCGCCGcGGu -3'
miRNA:   3'- gguaaaCuuCUG-UCGGa--CCGCGGC-CC- -5'
31249 3' -54.3 NC_006560.1 + 67194 0.66 0.962104
Target:  5'- -----cGGAGGCAGaCgaGGCGggaCCGGGg -3'
miRNA:   3'- gguaaaCUUCUGUC-GgaCCGC---GGCCC- -5'
31249 3' -54.3 NC_006560.1 + 137191 0.66 0.962104
Target:  5'- -----gGAGGGCgcGGCCccgccGGCGgCCGGGg -3'
miRNA:   3'- gguaaaCUUCUG--UCGGa----CCGC-GGCCC- -5'
31249 3' -54.3 NC_006560.1 + 70332 0.66 0.962104
Target:  5'- gCCGUggucggGGAGGCccccgaccGCCUGGgGCCcuGGGc -3'
miRNA:   3'- -GGUAaa----CUUCUGu-------CGGACCgCGG--CCC- -5'
31249 3' -54.3 NC_006560.1 + 34512 0.66 0.962104
Target:  5'- -----cGGAGGcCGGCacggGGCGCgCGGGg -3'
miRNA:   3'- gguaaaCUUCU-GUCGga--CCGCG-GCCC- -5'
31249 3' -54.3 NC_006560.1 + 137135 0.66 0.962104
Target:  5'- ----aUGggGGCccugaccaccgAGCucCUGGCGCuCGGGg -3'
miRNA:   3'- gguaaACuuCUG-----------UCG--GACCGCG-GCCC- -5'
31249 3' -54.3 NC_006560.1 + 22870 0.66 0.962104
Target:  5'- gCCug--GgcGACAGCCgcccggGGCuCUGGGg -3'
miRNA:   3'- -GGuaaaCuuCUGUCGGa-----CCGcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 38466 0.66 0.961757
Target:  5'- -----cGAGGAUcucgaugAGCCccgccaugcaGGCGCCGGGg -3'
miRNA:   3'- gguaaaCUUCUG-------UCGGa---------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 26876 0.66 0.958528
Target:  5'- cCCGUggcgGGAGAgCgAGaCCgacgGGgGCCGGGa -3'
miRNA:   3'- -GGUAaa--CUUCU-G-UC-GGa---CCgCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 76468 0.66 0.958528
Target:  5'- -----aGAAGGCGGCCgagcUGGaC-CCGGGg -3'
miRNA:   3'- gguaaaCUUCUGUCGG----ACC-GcGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 55442 0.66 0.958528
Target:  5'- gCAg--GcGGGCgAGCCcggGGCGCCcGGGg -3'
miRNA:   3'- gGUaaaCuUCUG-UCGGa--CCGCGG-CCC- -5'
31249 3' -54.3 NC_006560.1 + 145524 0.66 0.958528
Target:  5'- -------cGGGCgGGCCUcgacccgcccucGGCGCCGGGg -3'
miRNA:   3'- gguaaacuUCUG-UCGGA------------CCGCGGCCC- -5'
31249 3' -54.3 NC_006560.1 + 51945 0.66 0.958158
Target:  5'- -----aGGAGGCGGCCgcgcuccgGGCGCacgugucCGGGc -3'
miRNA:   3'- gguaaaCUUCUGUCGGa-------CCGCG-------GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.