miRNA display CGI


Results 1 - 20 of 208 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31249 5' -57.7 NC_006560.1 + 150453 0.67 0.759254
Target:  5'- cGGCGCGGGUuuGGGCGGg--GCcGGCc -3'
miRNA:   3'- -CUGCGUCUAggCUCGCCgagUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 150395 0.67 0.804979
Target:  5'- uGGgGCGGGUCCGGGCGGgccCUC-CccGCg -3'
miRNA:   3'- -CUgCGUCUAGGCUCGCC---GAGuGucCG- -5'
31249 5' -57.7 NC_006560.1 + 150219 0.71 0.576625
Target:  5'- cGCGCGGAcgcugCCGGGCGugcugguugcccgcGCUCuCGGGCg -3'
miRNA:   3'- cUGCGUCUa----GGCUCGC--------------CGAGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 149473 0.66 0.813696
Target:  5'- aGGCgGCAGAcggCCG-GCGGC-C-CGGGCc -3'
miRNA:   3'- -CUG-CGUCUa--GGCuCGCCGaGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 149149 0.71 0.569607
Target:  5'- cGGCGCGGGgcggCCcccagGGGCGGCgCGCGGGg -3'
miRNA:   3'- -CUGCGUCUa---GG-----CUCGCCGaGUGUCCg -5'
31249 5' -57.7 NC_006560.1 + 148406 0.68 0.700836
Target:  5'- gGACGCGGGgcgcUCCGGGCGG---GCcGGCg -3'
miRNA:   3'- -CUGCGUCU----AGGCUCGCCgagUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 147966 0.67 0.787091
Target:  5'- -uCGCAGAgcucggcgUCCGuGuCGGCgUCGgAGGCg -3'
miRNA:   3'- cuGCGUCU--------AGGCuC-GCCG-AGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 147898 0.7 0.640362
Target:  5'- cGGCGCAGA-CCucGCGGggCGgGGGCg -3'
miRNA:   3'- -CUGCGUCUaGGcuCGCCgaGUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 147279 0.7 0.599805
Target:  5'- cGGC-CGGggCCGGGCggggGGCUCugGCGGGCg -3'
miRNA:   3'- -CUGcGUCuaGGCUCG----CCGAG--UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 146988 0.66 0.830636
Target:  5'- --gGCGGggCauGGCGGCUCGC-GGCc -3'
miRNA:   3'- cugCGUCuaGgcUCGCCGAGUGuCCG- -5'
31249 5' -57.7 NC_006560.1 + 146851 0.69 0.660633
Target:  5'- cGGCGCGGggCgGGGCGGCgcccggcccagCGCcuGGGCc -3'
miRNA:   3'- -CUGCGUCuaGgCUCGCCGa----------GUG--UCCG- -5'
31249 5' -57.7 NC_006560.1 + 146593 0.7 0.630213
Target:  5'- cGGCGCccgAGG-CCGGGC-GCUUGCGGGCc -3'
miRNA:   3'- -CUGCG---UCUaGGCUCGcCGAGUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 146396 0.7 0.589707
Target:  5'- --gGCAGGgggCgGAGCGGCgggCGgAGGCg -3'
miRNA:   3'- cugCGUCUa--GgCUCGCCGa--GUgUCCG- -5'
31249 5' -57.7 NC_006560.1 + 145915 0.68 0.700836
Target:  5'- cGGCGgGGGUCCagGGGUGGCgcgagUC-CAGGCu -3'
miRNA:   3'- -CUGCgUCUAGG--CUCGCCG-----AGuGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 144363 0.7 0.589707
Target:  5'- -cCGCGGggCCGcggcggcaggGGCGGCgucCGCGGGCc -3'
miRNA:   3'- cuGCGUCuaGGC----------UCGCCGa--GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 142442 0.75 0.368379
Target:  5'- cGGCGCGGcggCCGcGCGGCccCGCAGGUg -3'
miRNA:   3'- -CUGCGUCua-GGCuCGCCGa-GUGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 142197 0.75 0.358071
Target:  5'- aGGCGCGGccUCCGGGCGGCgCGCcaccagagccauuaGGGCa -3'
miRNA:   3'- -CUGCGUCu-AGGCUCGCCGaGUG--------------UCCG- -5'
31249 5' -57.7 NC_006560.1 + 139828 0.67 0.804979
Target:  5'- --aGCcGAUCUGGGCGuGCgagGCGGGCu -3'
miRNA:   3'- cugCGuCUAGGCUCGC-CGag-UGUCCG- -5'
31249 5' -57.7 NC_006560.1 + 139715 0.71 0.529974
Target:  5'- gGACGCGGgGUCgGGGCGGaUCGCgcucuGGGCg -3'
miRNA:   3'- -CUGCGUC-UAGgCUCGCCgAGUG-----UCCG- -5'
31249 5' -57.7 NC_006560.1 + 137194 0.7 0.589707
Target:  5'- gGGCGCGGccCCGccGGCGGCcggggaGCGGGCg -3'
miRNA:   3'- -CUGCGUCuaGGC--UCGCCGag----UGUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.