miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3135 5' -62.6 NC_001493.1 + 111502 0.66 0.617062
Target:  5'- gGGCACUCGCGCCCGgugucggUCACUgGgaCa -3'
miRNA:   3'- -CCGUGGGCGCGGGUa------GGUGAgCggGg -5'
3135 5' -62.6 NC_001493.1 + 44078 0.66 0.617062
Target:  5'- uGCGCgCCGCGUCCAUgaaCGCgaagCGCaCCg -3'
miRNA:   3'- cCGUG-GGCGCGGGUAg--GUGa---GCGgGG- -5'
3135 5' -62.6 NC_001493.1 + 133772 0.66 0.607282
Target:  5'- cGGCACCCagGCcCCCGaCCGCccgggcgUGCCCa -3'
miRNA:   3'- -CCGUGGG--CGcGGGUaGGUGa------GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 83875 0.66 0.607282
Target:  5'- aGGUGgCCGUGUUCGUCCggcGCgcggCGCUCCc -3'
miRNA:   3'- -CCGUgGGCGCGGGUAGG---UGa---GCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 118600 0.66 0.607282
Target:  5'- uGGCAUCCuCGaCCuCGUCCGggucCUCGUCCg -3'
miRNA:   3'- -CCGUGGGcGC-GG-GUAGGU----GAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 123428 0.66 0.607282
Target:  5'- gGGCgACCgGUGUCCAUCC-CUCaccgaGUCUCg -3'
miRNA:   3'- -CCG-UGGgCGCGGGUAGGuGAG-----CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 36393 0.66 0.607282
Target:  5'- cGCaACCCGC-CCCAcugagcacccCCGCgcaggcCGCCCCg -3'
miRNA:   3'- cCG-UGGGCGcGGGUa---------GGUGa-----GCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 42330 0.66 0.607282
Target:  5'- cGCGCCaCGCG-CCGUCCGau--CCCCg -3'
miRNA:   3'- cCGUGG-GCGCgGGUAGGUgagcGGGG- -5'
3135 5' -62.6 NC_001493.1 + 102200 0.66 0.607282
Target:  5'- cGCGCUCGCGgggaCCAUCUcaUCGCUCUc -3'
miRNA:   3'- cCGUGGGCGCg---GGUAGGugAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 3045 0.66 0.607282
Target:  5'- uGGCAUCCuCGaCCuCGUCCGggucCUCGUCCg -3'
miRNA:   3'- -CCGUGGGcGC-GG-GUAGGU----GAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 91600 0.66 0.607282
Target:  5'- cGGCACagGUuCCUAUCUgcagACUCGUCCCc -3'
miRNA:   3'- -CCGUGggCGcGGGUAGG----UGAGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 7874 0.66 0.607282
Target:  5'- gGGCgACCgGUGUCCAUCC-CUCaccgaGUCUCg -3'
miRNA:   3'- -CCG-UGGgCGCGGGUAGGuGAG-----CGGGG- -5'
3135 5' -62.6 NC_001493.1 + 18218 0.66 0.607282
Target:  5'- cGGCACCCagGCcCCCGaCCGCccgggcgUGCCCa -3'
miRNA:   3'- -CCGUGGG--CGcGGGUaGGUGa------GCGGGg -5'
3135 5' -62.6 NC_001493.1 + 32762 0.66 0.59752
Target:  5'- uGGC-CCCGgaccguaaaCGCCCGUCCcGgUCGCgaCCg -3'
miRNA:   3'- -CCGuGGGC---------GCGGGUAGG-UgAGCGg-GG- -5'
3135 5' -62.6 NC_001493.1 + 111669 0.66 0.59752
Target:  5'- cGUACCCGCGagcaCCAgccCCGgUCGUCUg -3'
miRNA:   3'- cCGUGGGCGCg---GGUa--GGUgAGCGGGg -5'
3135 5' -62.6 NC_001493.1 + 59892 0.66 0.58778
Target:  5'- uGCGCcgCCGUGCUCGU-CAC-CGUCCCa -3'
miRNA:   3'- cCGUG--GGCGCGGGUAgGUGaGCGGGG- -5'
3135 5' -62.6 NC_001493.1 + 47939 0.66 0.585836
Target:  5'- cGGagaGCCCGUGCCCcgugaaccucgugGUCCGCaCGCauagguacgagaaCCCg -3'
miRNA:   3'- -CCg--UGGGCGCGGG-------------UAGGUGaGCG-------------GGG- -5'
3135 5' -62.6 NC_001493.1 + 106007 0.66 0.578071
Target:  5'- gGGCACCUGCcCCCAccguUCCuuCUcCGCCa- -3'
miRNA:   3'- -CCGUGGGCGcGGGU----AGGu-GA-GCGGgg -5'
3135 5' -62.6 NC_001493.1 + 27984 0.67 0.568396
Target:  5'- cGGCACCCGaaCCCGUaucCCAgUuacCGCCgCCa -3'
miRNA:   3'- -CCGUGGGCgcGGGUA---GGUgA---GCGG-GG- -5'
3135 5' -62.6 NC_001493.1 + 97601 0.67 0.568396
Target:  5'- cGGUAUgaUGUGCCCAugcUCCGCaguguUCuGCCCCa -3'
miRNA:   3'- -CCGUGg-GCGCGGGU---AGGUG-----AG-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.