miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31351 3' -54.1 NC_006623.1 + 68493 0.66 0.951393
Target:  5'- --gGgGAGCGCCA----AGGCaCGGCa -3'
miRNA:   3'- ucgCgCUCGCGGUaauuUUCGcGCCG- -5'
31351 3' -54.1 NC_006623.1 + 38515 0.66 0.951393
Target:  5'- aGGCGaGGGUGUCGUUcGAAuccaCGCGGCc -3'
miRNA:   3'- -UCGCgCUCGCGGUAAuUUUc---GCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 137316 0.66 0.947097
Target:  5'- cGCgGCGAGgGCCuugcagAAAcaAGgGCGGUa -3'
miRNA:   3'- uCG-CGCUCgCGGuaa---UUU--UCgCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 124296 0.66 0.947097
Target:  5'- cGCgGCGAGgGCCuugcagAAAcaAGgGCGGUa -3'
miRNA:   3'- uCG-CGCUCgCGGuaa---UUU--UCgCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 62871 0.66 0.942556
Target:  5'- -uUGUGAGUGUCGaacauAGAGCGgGGCu -3'
miRNA:   3'- ucGCGCUCGCGGUaau--UUUCGCgCCG- -5'
31351 3' -54.1 NC_006623.1 + 130130 0.66 0.942556
Target:  5'- uGUGCGAGauaacgauguCGCCGUguugacAAAAGCGCaGUa -3'
miRNA:   3'- uCGCGCUC----------GCGGUAa-----UUUUCGCGcCG- -5'
31351 3' -54.1 NC_006623.1 + 137369 0.66 0.942556
Target:  5'- cGCGCGAGaggauGCCG-----AGCGaUGGCg -3'
miRNA:   3'- uCGCGCUCg----CGGUaauuuUCGC-GCCG- -5'
31351 3' -54.1 NC_006623.1 + 40293 0.66 0.942556
Target:  5'- aAGCGCcAG-GCUAUUGGGAGacaucguaGCGGUa -3'
miRNA:   3'- -UCGCGcUCgCGGUAAUUUUCg-------CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 126371 0.66 0.93777
Target:  5'- uGCGCGGGUGCCAcgGuccauGAGUGaaGGUu -3'
miRNA:   3'- uCGCGCUCGCGGUaaUu----UUCGCg-CCG- -5'
31351 3' -54.1 NC_006623.1 + 144305 0.66 0.93777
Target:  5'- cGCGUacGAGC-UCGgu-AAGGUGCGGCa -3'
miRNA:   3'- uCGCG--CUCGcGGUaauUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 69871 0.66 0.93777
Target:  5'- gGGUGUuugauugaGAGUGaUCAaUGAugGAGCGCGGCg -3'
miRNA:   3'- -UCGCG--------CUCGC-GGUaAUU--UUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 117307 0.66 0.93777
Target:  5'- cGCGUacGAGC-UCGgu-AAGGUGCGGCa -3'
miRNA:   3'- uCGCG--CUCGcGGUaauUUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 122960 0.67 0.927453
Target:  5'- cGGCGCc-GCGCCAgcgccAGCGCGa- -3'
miRNA:   3'- -UCGCGcuCGCGGUaauuuUCGCGCcg -5'
31351 3' -54.1 NC_006623.1 + 105598 0.67 0.927453
Target:  5'- gGGCGCGGaggaacGCGagaaCGgu-GGAGCaGCGGCa -3'
miRNA:   3'- -UCGCGCU------CGCg---GUaauUUUCG-CGCCG- -5'
31351 3' -54.1 NC_006623.1 + 138652 0.67 0.927453
Target:  5'- cGGCGCc-GCGCCAgcgccAGCGCGa- -3'
miRNA:   3'- -UCGCGcuCGCGGUaauuuUCGCGCcg -5'
31351 3' -54.1 NC_006623.1 + 131223 0.67 0.92192
Target:  5'- -cCGCucGCGCUcc---GAGCGCGGCg -3'
miRNA:   3'- ucGCGcuCGCGGuaauuUUCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 128478 0.67 0.916138
Target:  5'- cGGCGCcuGCGCCcggUAcgGGCGC-GCg -3'
miRNA:   3'- -UCGCGcuCGCGGua-AUuuUCGCGcCG- -5'
31351 3' -54.1 NC_006623.1 + 108981 0.67 0.916138
Target:  5'- uGuCGUGGGUGCgAcgGGucGUGCGGCa -3'
miRNA:   3'- uC-GCGCUCGCGgUaaUUuuCGCGCCG- -5'
31351 3' -54.1 NC_006623.1 + 139309 0.67 0.916138
Target:  5'- cGCgGUGGGCGUCGacgGAGAGCGUcGCc -3'
miRNA:   3'- uCG-CGCUCGCGGUaa-UUUUCGCGcCG- -5'
31351 3' -54.1 NC_006623.1 + 122303 0.67 0.916138
Target:  5'- cGCgGUGGGCGUCGacgGAGAGCGUcGCc -3'
miRNA:   3'- uCG-CGCUCGCGGUaa-UUUUCGCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.