miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3136 3' -53.1 NC_001493.1 + 64614 0.66 0.973185
Target:  5'- gGUUAUCAUGugGCUgUUGUGcuGACGa -3'
miRNA:   3'- -CAAUGGUGCugUGGgAGCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 28264 0.66 0.972908
Target:  5'- -aUAUCACGGCGgauuacaacggucUgCUCGCGGAGuACGa -3'
miRNA:   3'- caAUGGUGCUGU-------------GgGAGCGCUUC-UGC- -5'
3136 3' -53.1 NC_001493.1 + 116998 0.66 0.970327
Target:  5'- uUUAUCGCGuGCACCUUUGCGAccuCGg -3'
miRNA:   3'- cAAUGGUGC-UGUGGGAGCGCUucuGC- -5'
3136 3' -53.1 NC_001493.1 + 44568 0.66 0.970327
Target:  5'- --cGCCGCgGACAUCg-CGCGGgcGGACGa -3'
miRNA:   3'- caaUGGUG-CUGUGGgaGCGCU--UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 1444 0.66 0.970327
Target:  5'- uUUAUCGCGuGCACCUUUGCGAccuCGg -3'
miRNA:   3'- cAAUGGUGC-UGUGGGAGCGCUucuGC- -5'
3136 3' -53.1 NC_001493.1 + 26473 0.66 0.970327
Target:  5'- --cACCggugaaacagagACGACugCC-CGCGAggaAGACGa -3'
miRNA:   3'- caaUGG------------UGCUGugGGaGCGCU---UCUGC- -5'
3136 3' -53.1 NC_001493.1 + 79911 0.66 0.970327
Target:  5'- -cUACCACGACAuuuCCCgaauuucCGCGGGcACGu -3'
miRNA:   3'- caAUGGUGCUGU---GGGa------GCGCUUcUGC- -5'
3136 3' -53.1 NC_001493.1 + 32313 0.66 0.970327
Target:  5'- ---cCCGCGAguugACgCUCGCGAAGAgGg -3'
miRNA:   3'- caauGGUGCUg---UGgGAGCGCUUCUgC- -5'
3136 3' -53.1 NC_001493.1 + 61997 0.66 0.967258
Target:  5'- --gGCCGCGuCAUagCC-CGUGAAGACa -3'
miRNA:   3'- caaUGGUGCuGUG--GGaGCGCUUCUGc -5'
3136 3' -53.1 NC_001493.1 + 19596 0.66 0.966939
Target:  5'- -gUGCCGCGGgagcgUACCCUcCGCGAaauaccgGGGCc -3'
miRNA:   3'- caAUGGUGCU-----GUGGGA-GCGCU-------UCUGc -5'
3136 3' -53.1 NC_001493.1 + 91370 0.66 0.963971
Target:  5'- -aUGCCACGAgGCCUgugaGCGaAAGuACGu -3'
miRNA:   3'- caAUGGUGCUgUGGGag--CGC-UUC-UGC- -5'
3136 3' -53.1 NC_001493.1 + 15554 0.66 0.963971
Target:  5'- --gACCGCaggagagacgGACAgugauuUCCUCGCGggGGCu -3'
miRNA:   3'- caaUGGUG----------CUGU------GGGAGCGCuuCUGc -5'
3136 3' -53.1 NC_001493.1 + 63141 0.66 0.963971
Target:  5'- -cUACCGCGACggugaaGCCCa--CGggGGCGa -3'
miRNA:   3'- caAUGGUGCUG------UGGGagcGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 126758 0.66 0.963971
Target:  5'- ---cCCACGGgucgucgaGCCCUCGgGAuGACGg -3'
miRNA:   3'- caauGGUGCUg-------UGGGAGCgCUuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 130600 0.66 0.963971
Target:  5'- ---uCCGgGGC-CCCUCGCGucucGACGa -3'
miRNA:   3'- caauGGUgCUGuGGGAGCGCuu--CUGC- -5'
3136 3' -53.1 NC_001493.1 + 15046 0.66 0.963971
Target:  5'- ---uCCGgGGC-CCCUCGCGucucGACGa -3'
miRNA:   3'- caauGGUgCUGuGGGAGCGCuu--CUGC- -5'
3136 3' -53.1 NC_001493.1 + 11204 0.66 0.963971
Target:  5'- ---cCCACGGgucgucgaGCCCUCGgGAuGACGg -3'
miRNA:   3'- caauGGUGCUg-------UGGGAGCgCUuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 81919 0.66 0.963971
Target:  5'- --gACCGCGugGCCaggGCGGAGAa- -3'
miRNA:   3'- caaUGGUGCugUGGgagCGCUUCUgc -5'
3136 3' -53.1 NC_001493.1 + 47344 0.66 0.963971
Target:  5'- -aUGCCcaaguccauauGCGugACCCagGCGuuGACGg -3'
miRNA:   3'- caAUGG-----------UGCugUGGGagCGCuuCUGC- -5'
3136 3' -53.1 NC_001493.1 + 131109 0.66 0.963971
Target:  5'- --gACCGCaggagagacgGACAgugauuUCCUCGCGggGGCu -3'
miRNA:   3'- caaUGGUG----------CUGU------GGGAGCGCuuCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.