miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3137 5' -47.2 NC_001493.1 + 26086 0.66 0.999857
Target:  5'- cACCGAAg----CGGC-UAAugGGugCg -3'
miRNA:   3'- -UGGCUUucuuaGCCGuAUUugCCugG- -5'
3137 5' -47.2 NC_001493.1 + 75137 0.66 0.999857
Target:  5'- cUCGAGGGAAUCGGgu----CGGugCu -3'
miRNA:   3'- uGGCUUUCUUAGCCguauuuGCCugG- -5'
3137 5' -47.2 NC_001493.1 + 77138 0.66 0.999815
Target:  5'- cGCCGAuAGu-UUGGCccacguGACGGGCUu -3'
miRNA:   3'- -UGGCUuUCuuAGCCGuau---UUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 129284 0.66 0.999762
Target:  5'- cUCGGGAcGggUCGGUcu---CGGGCCu -3'
miRNA:   3'- uGGCUUU-CuuAGCCGuauuuGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 13730 0.66 0.999762
Target:  5'- cUCGGGAcGggUCGGUcu---CGGGCCu -3'
miRNA:   3'- uGGCUUU-CuuAGCCGuauuuGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 120263 0.66 0.999762
Target:  5'- cCCGggGGc--CGGCAgcGGCGGgggucACCg -3'
miRNA:   3'- uGGCuuUCuuaGCCGUauUUGCC-----UGG- -5'
3137 5' -47.2 NC_001493.1 + 41693 0.66 0.999738
Target:  5'- -aCGAAAGGA-CGGCuuccuccaGGGCCg -3'
miRNA:   3'- ugGCUUUCUUaGCCGuauuug--CCUGG- -5'
3137 5' -47.2 NC_001493.1 + 7700 0.66 0.999697
Target:  5'- cCCGAucgucGAGAcUCGGUgagGGAUGGACa -3'
miRNA:   3'- uGGCU-----UUCUuAGCCGua-UUUGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 123254 0.66 0.999697
Target:  5'- cCCGAucgucGAGAcUCGGUgagGGAUGGACa -3'
miRNA:   3'- uGGCU-----UUCUuAGCCGua-UUUGCCUGg -5'
3137 5' -47.2 NC_001493.1 + 53316 0.66 0.999697
Target:  5'- gACCaGGAguucgGGAGUCGGCAguuGACuGACa -3'
miRNA:   3'- -UGG-CUU-----UCUUAGCCGUau-UUGcCUGg -5'
3137 5' -47.2 NC_001493.1 + 5528 0.66 0.999697
Target:  5'- gGCgGGAGGAG-CGaGCc---GCGGACCg -3'
miRNA:   3'- -UGgCUUUCUUaGC-CGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 121083 0.66 0.999697
Target:  5'- gGCgGGAGGAG-CGaGCc---GCGGACCg -3'
miRNA:   3'- -UGgCUUUCUUaGC-CGuauuUGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 49456 0.66 0.999697
Target:  5'- uUUGA---GAUCGGCAUAGACuGuGGCCg -3'
miRNA:   3'- uGGCUuucUUAGCCGUAUUUG-C-CUGG- -5'
3137 5' -47.2 NC_001493.1 + 132143 0.66 0.999616
Target:  5'- cCCGAGAGggUCgaacccuucgGGCGaacGGCGGuuuGCCa -3'
miRNA:   3'- uGGCUUUCuuAG----------CCGUau-UUGCC---UGG- -5'
3137 5' -47.2 NC_001493.1 + 16589 0.66 0.999616
Target:  5'- cCCGAGAGggUCgaacccuucgGGCGaacGGCGGuuuGCCa -3'
miRNA:   3'- uGGCUUUCuuAG----------CCGUau-UUGCC---UGG- -5'
3137 5' -47.2 NC_001493.1 + 3230 0.66 0.999616
Target:  5'- cCCGAGguGGAGUCagaGGCGgacgaGGACCc -3'
miRNA:   3'- uGGCUU--UCUUAG---CCGUauuugCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 118784 0.66 0.999616
Target:  5'- cCCGAGguGGAGUCagaGGCGgacgaGGACCc -3'
miRNA:   3'- uGGCUU--UCUUAG---CCGUauuugCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 87271 0.67 0.999396
Target:  5'- -gCGAccGggUUGGUGgaaauGCGGACCc -3'
miRNA:   3'- ugGCUuuCuuAGCCGUauu--UGCCUGG- -5'
3137 5' -47.2 NC_001493.1 + 71196 0.67 0.999396
Target:  5'- cUCGAAGuguGggUCGaGCAUGuGCGG-CCg -3'
miRNA:   3'- uGGCUUU---CuuAGC-CGUAUuUGCCuGG- -5'
3137 5' -47.2 NC_001493.1 + 123063 0.67 0.999251
Target:  5'- cCCGGu-GGAUCGGgA-GGGCGGACUc -3'
miRNA:   3'- uGGCUuuCUUAGCCgUaUUUGCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.