miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31389 3' -50.5 NC_006623.1 + 116875 0.66 0.994208
Target:  5'- cGAGGCgacuccauagCGAAGCCgCGCAGuACGgcauGGCGCg -3'
miRNA:   3'- aCUUCG----------GCUUUGG-GUGUU-UGC----UCGUG- -5'
31389 3' -50.5 NC_006623.1 + 27165 0.66 0.994208
Target:  5'- gGAAuuGCCGuggguuuucacGGCCCGCcgaccuuGACGGGCACu -3'
miRNA:   3'- aCUU--CGGCu----------UUGGGUGu------UUGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 69101 0.66 0.994121
Target:  5'- aGAAgcuGCCGGGuuuCCCAgCAAguccugcGCGAGCAUu -3'
miRNA:   3'- aCUU---CGGCUUu--GGGU-GUU-------UGCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 87078 0.66 0.993284
Target:  5'- uUGAGGgCGGuGGCCCAaggguUGAGCGCu -3'
miRNA:   3'- -ACUUCgGCU-UUGGGUguuu-GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 140873 0.66 0.993284
Target:  5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3'
miRNA:   3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 120739 0.66 0.993284
Target:  5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3'
miRNA:   3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 133465 0.66 0.992245
Target:  5'- cGAAGacgaCGAAGuCCC-CGAGgacacCGAGCACg -3'
miRNA:   3'- aCUUCg---GCUUU-GGGuGUUU-----GCUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 111670 0.66 0.992245
Target:  5'- -cGGGCCGcuGCCauuucaACGAACGGGCcCg -3'
miRNA:   3'- acUUCGGCuuUGGg-----UGUUUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 101464 0.66 0.992245
Target:  5'- uUGAGGCUagaauGGAAUCUgccagGCGGACuGAGCGCa -3'
miRNA:   3'- -ACUUCGG-----CUUUGGG-----UGUUUG-CUCGUG- -5'
31389 3' -50.5 NC_006623.1 + 102782 0.66 0.991082
Target:  5'- -uGGGCCGAuuCUaACAGGCGAGCc- -3'
miRNA:   3'- acUUCGGCUuuGGgUGUUUGCUCGug -5'
31389 3' -50.5 NC_006623.1 + 134787 0.66 0.991082
Target:  5'- cGAGGCCGAucguugcGCUCAC-GACG-GCAg -3'
miRNA:   3'- aCUUCGGCUu------UGGGUGuUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 119843 0.66 0.989786
Target:  5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3'
miRNA:   3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 141768 0.66 0.989786
Target:  5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3'
miRNA:   3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 135488 0.67 0.988347
Target:  5'- aGGuuuGCagacaGggGuCCCGCGGGCGGGCAg -3'
miRNA:   3'- aCUu--CGg----CuuU-GGGUGUUUGCUCGUg -5'
31389 3' -50.5 NC_006623.1 + 43327 0.67 0.986756
Target:  5'- cGAAGCUGAAAaCCACGu-CGaAGCAg -3'
miRNA:   3'- aCUUCGGCUUUgGGUGUuuGC-UCGUg -5'
31389 3' -50.5 NC_006623.1 + 36823 0.67 0.986756
Target:  5'- uUGAGGUCuuGACCCAgGggcGACGGGC-Ca -3'
miRNA:   3'- -ACUUCGGcuUUGGGUgU---UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 141069 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 46399 0.67 0.985002
Target:  5'- aGAAGCCGugGCgCGCgGAGCG-GCAa -3'
miRNA:   3'- aCUUCGGCuuUGgGUG-UUUGCuCGUg -5'
31389 3' -50.5 NC_006623.1 + 120543 0.67 0.985002
Target:  5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3'
miRNA:   3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5'
31389 3' -50.5 NC_006623.1 + 129304 0.67 0.983078
Target:  5'- gGAAugcGCCGG--UCCGCuGGACGAGUACg -3'
miRNA:   3'- aCUU---CGGCUuuGGGUG-UUUGCUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.