Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31389 | 3' | -50.5 | NC_006623.1 | + | 116875 | 0.66 | 0.994208 |
Target: 5'- cGAGGCgacuccauagCGAAGCCgCGCAGuACGgcauGGCGCg -3' miRNA: 3'- aCUUCG----------GCUUUGG-GUGUU-UGC----UCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 27165 | 0.66 | 0.994208 |
Target: 5'- gGAAuuGCCGuggguuuucacGGCCCGCcgaccuuGACGGGCACu -3' miRNA: 3'- aCUU--CGGCu----------UUGGGUGu------UUGCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 69101 | 0.66 | 0.994121 |
Target: 5'- aGAAgcuGCCGGGuuuCCCAgCAAguccugcGCGAGCAUu -3' miRNA: 3'- aCUU---CGGCUUu--GGGU-GUU-------UGCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 140873 | 0.66 | 0.993284 |
Target: 5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3' miRNA: 3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 87078 | 0.66 | 0.993284 |
Target: 5'- uUGAGGgCGGuGGCCCAaggguUGAGCGCu -3' miRNA: 3'- -ACUUCgGCU-UUGGGUguuu-GCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 120739 | 0.66 | 0.993284 |
Target: 5'- -aGGGCCGcugaguuguuuGGGCCCACcGACGuGCAg -3' miRNA: 3'- acUUCGGC-----------UUUGGGUGuUUGCuCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 111670 | 0.66 | 0.992245 |
Target: 5'- -cGGGCCGcuGCCauuucaACGAACGGGCcCg -3' miRNA: 3'- acUUCGGCuuUGGg-----UGUUUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 133465 | 0.66 | 0.992245 |
Target: 5'- cGAAGacgaCGAAGuCCC-CGAGgacacCGAGCACg -3' miRNA: 3'- aCUUCg---GCUUU-GGGuGUUU-----GCUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 101464 | 0.66 | 0.992245 |
Target: 5'- uUGAGGCUagaauGGAAUCUgccagGCGGACuGAGCGCa -3' miRNA: 3'- -ACUUCGG-----CUUUGGG-----UGUUUG-CUCGUG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 134787 | 0.66 | 0.991082 |
Target: 5'- cGAGGCCGAucguugcGCUCAC-GACG-GCAg -3' miRNA: 3'- aCUUCGGCUu------UGGGUGuUUGCuCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 102782 | 0.66 | 0.991082 |
Target: 5'- -uGGGCCGAuuCUaACAGGCGAGCc- -3' miRNA: 3'- acUUCGGCUuuGGgUGUUUGCUCGug -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 119843 | 0.66 | 0.989786 |
Target: 5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3' miRNA: 3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 141768 | 0.66 | 0.989786 |
Target: 5'- gUGuGGCCaauAACgUACAAGCGAGCGu -3' miRNA: 3'- -ACuUCGGcu-UUGgGUGUUUGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 135488 | 0.67 | 0.988347 |
Target: 5'- aGGuuuGCagacaGggGuCCCGCGGGCGGGCAg -3' miRNA: 3'- aCUu--CGg----CuuU-GGGUGUUUGCUCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 36823 | 0.67 | 0.986756 |
Target: 5'- uUGAGGUCuuGACCCAgGggcGACGGGC-Ca -3' miRNA: 3'- -ACUUCGGcuUUGGGUgU---UUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 43327 | 0.67 | 0.986756 |
Target: 5'- cGAAGCUGAAAaCCACGu-CGaAGCAg -3' miRNA: 3'- aCUUCGGCUUUgGGUGUuuGC-UCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 46399 | 0.67 | 0.985002 |
Target: 5'- aGAAGCCGugGCgCGCgGAGCG-GCAa -3' miRNA: 3'- aCUUCGGCuuUGgGUG-UUUGCuCGUg -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 141069 | 0.67 | 0.985002 |
Target: 5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3' miRNA: 3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 120543 | 0.67 | 0.985002 |
Target: 5'- cGAAGCCGAuAACCUGCAcgucGGUGGGCcCa -3' miRNA: 3'- aCUUCGGCU-UUGGGUGU----UUGCUCGuG- -5' |
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31389 | 3' | -50.5 | NC_006623.1 | + | 129304 | 0.67 | 0.983078 |
Target: 5'- gGAAugcGCCGG--UCCGCuGGACGAGUACg -3' miRNA: 3'- aCUU---CGGCUuuGGGUG-UUUGCUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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