miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 203475 0.66 0.963054
Target:  5'- gGGAGGAUCaa--GGACCAGaAUGGuCUg -3'
miRNA:   3'- -CCUCCUGGacgaCCUGGUC-UACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 222677 0.66 0.963054
Target:  5'- --uGGuCCUGCUGGuCCugcuGGUGGaACUg -3'
miRNA:   3'- ccuCCuGGACGACCuGGu---CUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 37465 0.66 0.956151
Target:  5'- uGGuGGAUCUGCUGGuAUUAauacUGGAUCa -3'
miRNA:   3'- -CCuCCUGGACGACC-UGGUcu--ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28213 0.66 0.956151
Target:  5'- uGGAgauGGuCCUcCUGGuCCAGGUGGaACUg -3'
miRNA:   3'- -CCU---CCuGGAcGACCuGGUCUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 28565 0.66 0.952391
Target:  5'- -aAGuuCCUGgUGGACCuGGaGGACCa -3'
miRNA:   3'- ccUCcuGGACgACCUGGuCUaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27964 0.67 0.94842
Target:  5'- --uGGuCCUGCUGGuCCuacugguggAGAUGGuCCu -3'
miRNA:   3'- ccuCCuGGACGACCuGG---------UCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 222993 0.67 0.94842
Target:  5'- -cAGGcgaACCaGCaGGACCAGGugaaccuugUGGACCa -3'
miRNA:   3'- ccUCC---UGGaCGaCCUGGUCU---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 14004 0.67 0.944235
Target:  5'- -cAGGAUCUGgUGGugCAGGUGuauaucGAUCa -3'
miRNA:   3'- ccUCCUGGACgACCugGUCUAC------CUGG- -5'
31661 5' -56.4 NC_006883.1 + 23274 0.67 0.943805
Target:  5'- uGAGGACCaggagcaccaucaUcaccaGCaGGACCAGuUGGACCn -3'
miRNA:   3'- cCUCCUGG-------------A-----CGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26359 0.67 0.939835
Target:  5'- --uGGuCCUGCUGGucccaCAGGUGGaACUg -3'
miRNA:   3'- ccuCCuGGACGACCug---GUCUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 23058 0.67 0.939835
Target:  5'- -aAGGuCCUGCUGGuucuCCAGGuccaacUGGuCCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 26476 0.67 0.939835
Target:  5'- uGGAaguaauGGuCCUGCUGGugCAacUGGuCCu -3'
miRNA:   3'- -CCU------CCuGGACGACCugGUcuACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 27911 0.67 0.93038
Target:  5'- --uGGuCCUGCUGGugCugacggaaguGAUGGugCu -3'
miRNA:   3'- ccuCCuGGACGACCugGu---------CUACCugG- -5'
31661 5' -56.4 NC_006883.1 + 39888 0.68 0.920047
Target:  5'- uGGuaauGGugCUGCUGGugUuccUGGAUCa -3'
miRNA:   3'- -CCu---CCugGACGACCugGucuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 223035 0.68 0.914552
Target:  5'- -aAGGACCaGUaGGACCAGGauuuccaacaGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCUa---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 23410 0.68 0.914552
Target:  5'- uGGAccuGGuCCUGCUGGuccuCCAGGuccaucUGGuCCa -3'
miRNA:   3'- -CCU---CCuGGACGACCu---GGUCU------ACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 28178 0.68 0.896764
Target:  5'- -cAGcACCaGCaGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCcUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 21854 0.68 0.896764
Target:  5'- uGGAgauGGuCCUGCUGGuCCAaGUGGuucACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGUcUACC---UGG- -5'
31661 5' -56.4 NC_006883.1 + 192092 0.69 0.870103
Target:  5'- ---uGGCCUGCUGGugUAGGUGGu-- -3'
miRNA:   3'- ccucCUGGACGACCugGUCUACCugg -5'
31661 5' -56.4 NC_006883.1 + 28078 0.69 0.870103
Target:  5'- cGGAacuGGuCCUGCUGGuCCuccaGGACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGucuaCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.