miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31661 5' -56.4 NC_006883.1 + 28232 0.75 0.571146
Target:  5'- -uAGGACCaGCaGGACCAGucGGACCa -3'
miRNA:   3'- ccUCCUGGaCGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28213 0.66 0.956151
Target:  5'- uGGAgauGGuCCUcCUGGuCCAGGUGGaACUg -3'
miRNA:   3'- -CCU---CCuGGAcGACCuGGUCUACC-UGG- -5'
31661 5' -56.4 NC_006883.1 + 28178 0.68 0.896764
Target:  5'- -cAGcACCaGCaGGACCAGuUGGACCa -3'
miRNA:   3'- ccUCcUGGaCGaCCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28142 0.83 0.209763
Target:  5'- -aAGGACCaGUUGGACCAGuUGGACCu -3'
miRNA:   3'- ccUCCUGGaCGACCUGGUCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28105 0.8 0.33054
Target:  5'- aGGAccaguuGGACCUGgaGGACCAGcaGGACCu -3'
miRNA:   3'- -CCU------CCUGGACgaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 28078 0.69 0.870103
Target:  5'- cGGAacuGGuCCUGCUGGuCCuccaGGACCu -3'
miRNA:   3'- -CCU---CCuGGACGACCuGGucuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27964 0.67 0.94842
Target:  5'- --uGGuCCUGCUGGuCCuacugguggAGAUGGuCCu -3'
miRNA:   3'- ccuCCuGGACGACCuGG---------UCUACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 27911 0.67 0.93038
Target:  5'- --uGGuCCUGCUGGugCugacggaaguGAUGGugCu -3'
miRNA:   3'- ccuCCuGGACGACCugGu---------CUACCugG- -5'
31661 5' -56.4 NC_006883.1 + 27820 0.71 0.758339
Target:  5'- -uAGGuCCUGCUGGuccuCCAGGUccaacugguccuacaGGACCu -3'
miRNA:   3'- ccUCCuGGACGACCu---GGUCUA---------------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27758 0.75 0.542304
Target:  5'- aGGAccaguuGGACCUGUgGGACCAGuUGGuCCu -3'
miRNA:   3'- -CCU------CCUGGACGaCCUGGUCuACCuGG- -5'
31661 5' -56.4 NC_006883.1 + 27723 0.79 0.352543
Target:  5'- -uGGGACCUGUcGGACCAGuaGGACCu -3'
miRNA:   3'- ccUCCUGGACGaCCUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27662 0.9 0.086205
Target:  5'- aGGAGGACCUGgaGGACCuGcUGGACCu -3'
miRNA:   3'- -CCUCCUGGACgaCCUGGuCuACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27581 0.92 0.065022
Target:  5'- uGGAGGACCUGCUGGACCuGugccaccaccUGGACCa -3'
miRNA:   3'- -CCUCCUGGACGACCUGGuCu---------ACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27536 0.83 0.214774
Target:  5'- uGGAGGACCaucuccaccUGUaGGACCuGAUGGACCu -3'
miRNA:   3'- -CCUCCUGG---------ACGaCCUGGuCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 27498 0.84 0.181773
Target:  5'- -uAGGACCUGCUGGACCuguaGGACCa -3'
miRNA:   3'- ccUCCUGGACGACCUGGucuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26985 0.79 0.352543
Target:  5'- aGGAGGACCUGgaGaACCAGcaGGACCu -3'
miRNA:   3'- -CCUCCUGGACgaCcUGGUCuaCCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26807 0.84 0.181773
Target:  5'- -cAGGACCaGUUGGACCuGGUGGACCa -3'
miRNA:   3'- ccUCCUGGaCGACCUGGuCUACCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26779 0.76 0.484419
Target:  5'- aGGAccaguuGGACCUGCaGGACCAGuugcaccagcaGGACCa -3'
miRNA:   3'- -CCU------CCUGGACGaCCUGGUCua---------CCUGG- -5'
31661 5' -56.4 NC_006883.1 + 26710 0.87 0.135567
Target:  5'- aGGAGGACCUGCUGGACCuGGAgu-ACCa -3'
miRNA:   3'- -CCUCCUGGACGACCUGG-UCUaccUGG- -5'
31661 5' -56.4 NC_006883.1 + 26665 0.89 0.090706
Target:  5'- uGGAGGACC-GuCUGGACCAGuUGGACCa -3'
miRNA:   3'- -CCUCCUGGaC-GACCUGGUCuACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.