miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31680 5' -59.4 NC_006883.1 + 73403 0.66 0.868742
Target:  5'- aCUGuccGUCCCA-AGGUUUCugauCAGGUCCAc -3'
miRNA:   3'- -GAC---CAGGGUgUCCAGGGu---GUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28218 0.66 0.854311
Target:  5'- aUGGUCCUcCuGGUCCagguggaACuGGUCCg -3'
miRNA:   3'- gACCAGGGuGuCCAGGg------UGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28287 0.66 0.854311
Target:  5'- gUGGUCCUcCAGGUCCaC-CAGGaacUUCAg -3'
miRNA:   3'- gACCAGGGuGUCCAGG-GuGUCC---AGGU- -5'
31680 5' -59.4 NC_006883.1 + 21540 0.67 0.831324
Target:  5'- cCUGGUCCUGCuGG-CCCuCAaggugauguuGGUCCGa -3'
miRNA:   3'- -GACCAGGGUGuCCaGGGuGU----------CCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21960 0.67 0.806874
Target:  5'- aUGGUCCaAguGGUCCUcCuGGUCCu -3'
miRNA:   3'- gACCAGGgUguCCAGGGuGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28022 0.68 0.772318
Target:  5'- aCUGGUCCaACuGGUCCUACuGGUg-- -3'
miRNA:   3'- -GACCAGGgUGuCCAGGGUGuCCAggu -5'
31680 5' -59.4 NC_006883.1 + 22911 0.68 0.754335
Target:  5'- aCUGGaCCUGCuGGUCCUgauGGUCCAa -3'
miRNA:   3'- -GACCaGGGUGuCCAGGGuguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 22884 0.69 0.717271
Target:  5'- aCUGGUCCUGCuGGUgCUcCAGGUUUAa -3'
miRNA:   3'- -GACCAGGGUGuCCAgGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23669 0.69 0.698315
Target:  5'- aCUGGUCCaACuGGUCCgACuGGUUCu -3'
miRNA:   3'- -GACCAGGgUGuCCAGGgUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 21859 0.7 0.688758
Target:  5'- aUGGUCCUGCuGGUCCaAguGGUUCAn -3'
miRNA:   3'- gACCAGGGUGuCCAGGgUguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 27873 0.71 0.611402
Target:  5'- aCUGGUCCaACuGGUCCUucagguggaACuGGUCCAa -3'
miRNA:   3'- -GACCAGGgUGuCCAGGG---------UGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 23012 0.71 0.592067
Target:  5'- cCUGGUCCUcaAGGUCCUccagguaucGguGGUCCAa -3'
miRNA:   3'- -GACCAGGGugUCCAGGG---------UguCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 28182 0.72 0.525516
Target:  5'- gUGGUCCUcCAGGaCCUcCAGGUCCu -3'
miRNA:   3'- gACCAGGGuGUCCaGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 26707 0.73 0.497834
Target:  5'- -aGGUCCUGCuGGUUCUcCAGGUCCu -3'
miRNA:   3'- gaCCAGGGUGuCCAGGGuGUCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 28082 0.74 0.436015
Target:  5'- aCUGGUCCUGCuGGUCCUcCAGGaCCu -3'
miRNA:   3'- -GACCAGGGUGuCCAGGGuGUCCaGGu -5'
31680 5' -59.4 NC_006883.1 + 222796 0.74 0.427546
Target:  5'- uUGGUCCUcCAGGUCCUcCuGGUCCu -3'
miRNA:   3'- gACCAGGGuGUCCAGGGuGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 23059 0.74 0.419175
Target:  5'- -aGGUCCUGCuGGUUCUcCAGGUCCAn -3'
miRNA:   3'- gaCCAGGGUGuCCAGGGuGUCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 21585 0.74 0.419175
Target:  5'- cCUGGUCCUACuGGaCCUGCuGGUCCu -3'
miRNA:   3'- -GACCAGGGUGuCCaGGGUGuCCAGGu -5'
31680 5' -59.4 NC_006883.1 + 26546 0.75 0.394672
Target:  5'- aCUGGUCCUGCuGGUCCCcaagguguuGCuGGUCUAg -3'
miRNA:   3'- -GACCAGGGUGuCCAGGG---------UGuCCAGGU- -5'
31680 5' -59.4 NC_006883.1 + 26429 0.76 0.355951
Target:  5'- aCUGGUaCUC-CAGGUCCaGCAGGUCCu -3'
miRNA:   3'- -GACCA-GGGuGUCCAGGgUGUCCAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.