miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31685 3' -55.8 NC_006883.1 + 27386 0.66 0.975299
Target:  5'- uCCaGCaGGUCCUcCaGGUCCUcCUGGa -3'
miRNA:   3'- -GGcUGaCCAGGAcGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 23927 0.66 0.975299
Target:  5'- -gGACcaguUGGaCCUGUaGGaCCUGCUGGa -3'
miRNA:   3'- ggCUG----ACCaGGACGaCCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 38578 0.66 0.975299
Target:  5'- aCCGAaauaUGGUCCUGCcuUGGUUacACUa- -3'
miRNA:   3'- -GGCUg---ACCAGGACG--ACCAGgaUGAcc -5'
31685 3' -55.8 NC_006883.1 + 27314 0.66 0.975299
Target:  5'- uCCaGCaGGUCCUcCaGGUCCUcCUGGa -3'
miRNA:   3'- -GGcUGaCCAGGAcGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 23455 0.66 0.975299
Target:  5'- uCCucCaGGUCCaGCaGGUCCUcCUGGa -3'
miRNA:   3'- -GGcuGaCCAGGaCGaCCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 200634 0.66 0.975299
Target:  5'- -aGACUGGUCgUGCUGGacaUCCa----- -3'
miRNA:   3'- ggCUGACCAGgACGACC---AGGaugacc -5'
31685 3' -55.8 NC_006883.1 + 121405 0.66 0.967182
Target:  5'- aCCuuGCUGGcguucagCCUaugaaUGGUCCUACUGGa -3'
miRNA:   3'- -GGc-UGACCa------GGAcg---ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 192094 0.67 0.962156
Target:  5'- gCCuGCUGGUgUaggugguaaggguaaUGCUGGUgUUGCUGGu -3'
miRNA:   3'- -GGcUGACCAgG---------------ACGACCAgGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 26443 0.67 0.955152
Target:  5'- uCCaGCaGGUCCUccuggaaaugauggaGCagauggaaguaaUGGUCCUGCUGGu -3'
miRNA:   3'- -GGcUGaCCAGGA---------------CG------------ACCAGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 23656 0.67 0.953652
Target:  5'- uCCuACaGGUCCaaCUGGUCCaACUGGn -3'
miRNA:   3'- -GGcUGaCCAGGacGACCAGGaUGACC- -5'
31685 3' -55.8 NC_006883.1 + 28333 0.67 0.949756
Target:  5'- uCCGcCUGGaCCUGgaGGaCCUGgaGGa -3'
miRNA:   3'- -GGCuGACCaGGACgaCCaGGAUgaCC- -5'
31685 3' -55.8 NC_006883.1 + 27511 0.67 0.949756
Target:  5'- cCUGA-UGGaCCUGUaGGaCCUGCUGGa -3'
miRNA:   3'- -GGCUgACCaGGACGaCCaGGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21885 0.67 0.945649
Target:  5'- ---cCUGGUCCUcCaGGUCCUAgUGGu -3'
miRNA:   3'- ggcuGACCAGGAcGaCCAGGAUgACC- -5'
31685 3' -55.8 NC_006883.1 + 28212 0.67 0.945649
Target:  5'- gUGGagaUGGUCCUcCUGGUCCaGgUGGa -3'
miRNA:   3'- gGCUg--ACCAGGAcGACCAGGaUgACC- -5'
31685 3' -55.8 NC_006883.1 + 112312 0.68 0.941326
Target:  5'- -gGuACUGGUggaUCUGgUGGUgCUACUGGu -3'
miRNA:   3'- ggC-UGACCA---GGACgACCAgGAUGACC- -5'
31685 3' -55.8 NC_006883.1 + 21665 0.68 0.93203
Target:  5'- uCCaACaGGUCCaaCUGGUCCUcCUGGu -3'
miRNA:   3'- -GGcUGaCCAGGacGACCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 27224 0.68 0.93203
Target:  5'- uCCuACaGGUCCaGCaGGUCCUACaGGu -3'
miRNA:   3'- -GGcUGaCCAGGaCGaCCAGGAUGaCC- -5'
31685 3' -55.8 NC_006883.1 + 21494 0.68 0.927055
Target:  5'- --aACUGGUCCUuCUGGUCCUcCaGGn -3'
miRNA:   3'- ggcUGACCAGGAcGACCAGGAuGaCC- -5'
31685 3' -55.8 NC_006883.1 + 26707 0.68 0.927055
Target:  5'- -----aGGUCCUGCUgguucuccaGGUCCUcCUGGu -3'
miRNA:   3'- ggcugaCCAGGACGA---------CCAGGAuGACC- -5'
31685 3' -55.8 NC_006883.1 + 26281 0.69 0.904968
Target:  5'- uCCuACaGGUCCaGCaGGUCCUcCUGGa -3'
miRNA:   3'- -GGcUGaCCAGGaCGaCCAGGAuGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.