Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
31720 | 3' | -52.2 | NC_006938.1 | + | 50247 | 0.66 | 0.907397 |
Target: 5'- --aGGCCGggGUC---CGGC-GGGUCc -3' miRNA: 3'- ucaUCGGCuuCAGuuuGCUGaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 54411 | 0.66 | 0.906729 |
Target: 5'- --cGGCCGGAGUCGAggccACcACUGuccucgcGGCCc -3' miRNA: 3'- ucaUCGGCUUCAGUU----UGcUGAC-------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 21121 | 0.66 | 0.900598 |
Target: 5'- gGGUuccGGCCGAGGgaguggCAGGCGucGCUccGGCCg -3' miRNA: 3'- -UCA---UCGGCUUCa-----GUUUGC--UGAc-CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 45661 | 0.66 | 0.900598 |
Target: 5'- --aGGCCgGGAGgccgaGAACGGCUGGaGCg -3' miRNA: 3'- ucaUCGG-CUUCag---UUUGCUGACC-CGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 50890 | 0.66 | 0.899903 |
Target: 5'- --cGGCCGAGGcgugcUCAAcgccuuccgcgagGCGGCcgaGGGCCu -3' miRNA: 3'- ucaUCGGCUUC-----AGUU-------------UGCUGa--CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 34726 | 0.66 | 0.898505 |
Target: 5'- aGGgAGCgGGAGUCAGGCGAggcaCUGaccgugcgcgucgcGGCCc -3' miRNA: 3'- -UCaUCGgCUUCAGUUUGCU----GAC--------------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 53957 | 0.66 | 0.893525 |
Target: 5'- aGGUccAGCgGGAGUCAgccccGACGACgaacacccGGCCc -3' miRNA: 3'- -UCA--UCGgCUUCAGU-----UUGCUGac------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 52649 | 0.66 | 0.886182 |
Target: 5'- gGGUuucgAGCgGcg--CAAcaGCGACUGGGCCc -3' miRNA: 3'- -UCA----UCGgCuucaGUU--UGCUGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 7587 | 0.66 | 0.878574 |
Target: 5'- -cUGGCCGAGG----GCGuCUcGGGCCg -3' miRNA: 3'- ucAUCGGCUUCaguuUGCuGA-CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 23515 | 0.67 | 0.870706 |
Target: 5'- uAGUAGCCGAcaccggacGUCAGGCcACUuGGCa -3' miRNA: 3'- -UCAUCGGCUu-------CAGUUUGcUGAcCCGg -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 26845 | 0.67 | 0.862586 |
Target: 5'- --cGGCaCGAAGaCAGACGACgagauccuGGCCg -3' miRNA: 3'- ucaUCG-GCUUCaGUUUGCUGac------CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 43260 | 0.67 | 0.862586 |
Target: 5'- cGGUGGCCcug--CAGACGACUGG-CUu -3' miRNA: 3'- -UCAUCGGcuucaGUUUGCUGACCcGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 42227 | 0.67 | 0.845617 |
Target: 5'- cGUuGCCGGAGUCGA-UGAUgagagugGGaGCCg -3' miRNA: 3'- uCAuCGGCUUCAGUUuGCUGa------CC-CGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 16262 | 0.67 | 0.845617 |
Target: 5'- cAGUGGCaCGAcGUgccgGAGCG-CUGGGUCg -3' miRNA: 3'- -UCAUCG-GCUuCAg---UUUGCuGACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 10879 | 0.67 | 0.836786 |
Target: 5'- -aUAGCCGAcGUCccacuccccACGGguCUGGGCCc -3' miRNA: 3'- ucAUCGGCUuCAGuu-------UGCU--GACCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 23755 | 0.67 | 0.836786 |
Target: 5'- cGUc-CCGGagGGUCAGACGGa-GGGCCg -3' miRNA: 3'- uCAucGGCU--UCAGUUUGCUgaCCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 41832 | 0.68 | 0.827734 |
Target: 5'- --gGGCCGAcGGUCAAcacCGGCUcugucGGGCUg -3' miRNA: 3'- ucaUCGGCU-UCAGUUu--GCUGA-----CCCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 17050 | 0.68 | 0.827734 |
Target: 5'- gAGcGGCCGAGGUCAucgAGCaGCUGGcauuCCa -3' miRNA: 3'- -UCaUCGGCUUCAGU---UUGcUGACCc---GG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 23671 | 0.68 | 0.809012 |
Target: 5'- cGU-GCCGAAG-CAGcGCGACgucGGCCa -3' miRNA: 3'- uCAuCGGCUUCaGUU-UGCUGac-CCGG- -5' |
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31720 | 3' | -52.2 | NC_006938.1 | + | 13379 | 0.68 | 0.799361 |
Target: 5'- gAGUAGCCGGuguucAGUCGAGCGAUguacGGa-- -3' miRNA: 3'- -UCAUCGGCU-----UCAGUUUGCUGa---CCcgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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