miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31737 3' -60.4 NC_006938.1 + 53030 0.66 0.529704
Target:  5'- -cUCGCCGCgcaGUCUGGCaccacGGUGGAGgCa -3'
miRNA:   3'- ccAGUGGCGg--CAGGUCG-----UCGCCUCgG- -5'
31737 3' -60.4 NC_006938.1 + 26034 0.66 0.529704
Target:  5'- cGGccUCGuCCaGCUugCCAGCGGCGGcGGCCu -3'
miRNA:   3'- -CC--AGU-GG-CGGcaGGUCGUCGCC-UCGG- -5'
31737 3' -60.4 NC_006938.1 + 12765 0.66 0.529704
Target:  5'- cGUCugCGaCCGcugggagcugcUCCAGgacggAGCGGAGCUc -3'
miRNA:   3'- cCAGugGC-GGC-----------AGGUCg----UCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 213 0.66 0.527688
Target:  5'- cGGcUCGCCGCCGcCCuucggaaccuuCGGCaGGuGCCg -3'
miRNA:   3'- -CC-AGUGGCGGCaGGuc---------GUCG-CCuCGG- -5'
31737 3' -60.4 NC_006938.1 + 9492 0.66 0.519652
Target:  5'- -aUCGCCGCCaccaaUCCcuGCGGCGaGcAGCCc -3'
miRNA:   3'- ccAGUGGCGGc----AGGu-CGUCGC-C-UCGG- -5'
31737 3' -60.4 NC_006938.1 + 43068 0.66 0.519652
Target:  5'- -aUCGCUGgcaacucgcCCGUUCAGCAGCaGGAuGUCg -3'
miRNA:   3'- ccAGUGGC---------GGCAGGUCGUCG-CCU-CGG- -5'
31737 3' -60.4 NC_006938.1 + 5573 0.66 0.509678
Target:  5'- ---aGCCGgaGUCCAGCgacuggAGCagGGAGCCg -3'
miRNA:   3'- ccagUGGCggCAGGUCG------UCG--CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 50347 0.66 0.508684
Target:  5'- cGGUCaACCGCUccaUCCgagacaucggcacGGgAGCGGAGgCCa -3'
miRNA:   3'- -CCAG-UGGCGGc--AGG-------------UCgUCGCCUC-GG- -5'
31737 3' -60.4 NC_006938.1 + 7610 0.66 0.499784
Target:  5'- cGGUUGCCGaaGuucUCCAGCGGCaGGucGUCg -3'
miRNA:   3'- -CCAGUGGCggC---AGGUCGUCG-CCu-CGG- -5'
31737 3' -60.4 NC_006938.1 + 21577 0.66 0.499784
Target:  5'- uGGuUCACaagGCCGaCCAGUccGUGGAGCUc -3'
miRNA:   3'- -CC-AGUGg--CGGCaGGUCGu-CGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 22917 0.66 0.499784
Target:  5'- aGG-CACUGCUGgaCCAGCGgauGCGGAcgauGCCc -3'
miRNA:   3'- -CCaGUGGCGGCa-GGUCGU---CGCCU----CGG- -5'
31737 3' -60.4 NC_006938.1 + 13948 0.66 0.499784
Target:  5'- -cUCACCGU--UCCG--AGCGGGGCCg -3'
miRNA:   3'- ccAGUGGCGgcAGGUcgUCGCCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 50235 0.66 0.489976
Target:  5'- --aCACCGCCaUCCAGgccggggucCGGCGGGuCCg -3'
miRNA:   3'- ccaGUGGCGGcAGGUC---------GUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 31800 0.66 0.489
Target:  5'- aGUCGUCGUCGUggaccucCCAGUGGCGGA-CCa -3'
miRNA:   3'- cCAGUGGCGGCA-------GGUCGUCGCCUcGG- -5'
31737 3' -60.4 NC_006938.1 + 17265 0.66 0.480258
Target:  5'- cGGUCGCCaucaaCGUCC-GCcGCGcGGCCa -3'
miRNA:   3'- -CCAGUGGcg---GCAGGuCGuCGCcUCGG- -5'
31737 3' -60.4 NC_006938.1 + 42633 0.67 0.470636
Target:  5'- gGGUCACUGCUc-CCAGUAccaaaGGAGCUg -3'
miRNA:   3'- -CCAGUGGCGGcaGGUCGUcg---CCUCGG- -5'
31737 3' -60.4 NC_006938.1 + 11446 0.67 0.470636
Target:  5'- gGGUCAg-GUCGgCCAGCAG-GGAGCg -3'
miRNA:   3'- -CCAGUggCGGCaGGUCGUCgCCUCGg -5'
31737 3' -60.4 NC_006938.1 + 31736 0.67 0.461113
Target:  5'- cGGaacaGCUcCCGcUCCAGCAGCucGAGCCa -3'
miRNA:   3'- -CCag--UGGcGGC-AGGUCGUCGc-CUCGG- -5'
31737 3' -60.4 NC_006938.1 + 24402 0.67 0.461113
Target:  5'- --cCACCGCCGUU--GCcuGCGGAcGCCu -3'
miRNA:   3'- ccaGUGGCGGCAGguCGu-CGCCU-CGG- -5'
31737 3' -60.4 NC_006938.1 + 12703 0.67 0.461113
Target:  5'- -cUCuCCGUCGgugCCgAGCuGGCGGAGCUc -3'
miRNA:   3'- ccAGuGGCGGCa--GG-UCG-UCGCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.