miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31750 3' -58.1 NC_006938.1 + 42728 0.66 0.632923
Target:  5'- cCACCucgcgcuguguCUUGcCCGCGCGGCGG--CGGUa -3'
miRNA:   3'- -GUGG-----------GAGCuGGCGCGCUGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 39808 0.66 0.611769
Target:  5'- gGCCCUCcgucuGACCcucCGgGACGGGucaguuguucGCGGCa -3'
miRNA:   3'- gUGGGAG-----CUGGc--GCgCUGCCU----------UGUCG- -5'
31750 3' -58.1 NC_006938.1 + 37290 0.66 0.622342
Target:  5'- aCACCCUgGAagGUGuCGACGaGAGCAucGCa -3'
miRNA:   3'- -GUGGGAgCUggCGC-GCUGC-CUUGU--CG- -5'
31750 3' -58.1 NC_006938.1 + 36586 0.69 0.449619
Target:  5'- aCACCCacUUGuaACCGCGC--CGGGGCAGUg -3'
miRNA:   3'- -GUGGG--AGC--UGGCGCGcuGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 35563 0.73 0.271103
Target:  5'- cCGCCUUgccaagggcgcgaCGACCGCGCGACuGGA--GGCa -3'
miRNA:   3'- -GUGGGA-------------GCUGGCGCGCUG-CCUugUCG- -5'
31750 3' -58.1 NC_006938.1 + 35366 0.73 0.271766
Target:  5'- gCGCUCUCGucguCUGUGgGACGGGAguGCu -3'
miRNA:   3'- -GUGGGAGCu---GGCGCgCUGCCUUguCG- -5'
31750 3' -58.1 NC_006938.1 + 35177 0.66 0.643503
Target:  5'- uGCCgggUUGACCGUguaggGCGGCcggaGGGACAGCu -3'
miRNA:   3'- gUGGg--AGCUGGCG-----CGCUG----CCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 34013 0.73 0.25242
Target:  5'- gGCCCUCGcggacacCCGCGuCGACGGccucucuCAGCg -3'
miRNA:   3'- gUGGGAGCu------GGCGC-GCUGCCuu-----GUCG- -5'
31750 3' -58.1 NC_006938.1 + 33657 0.67 0.568676
Target:  5'- --aCCUCGACCaguggacccagguGCGCGACacccacgaGGGcCAGCa -3'
miRNA:   3'- gugGGAGCUGG-------------CGCGCUG--------CCUuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 32828 0.7 0.421765
Target:  5'- cCGCCaagcUGGCCGCGUGGCucgaGGGCAGCu -3'
miRNA:   3'- -GUGGga--GCUGGCGCGCUGc---CUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 31718 1.11 0.000534
Target:  5'- aCACCCUCGACCGCGCGACGGAACAGCu -3'
miRNA:   3'- -GUGGGAGCUGGCGCGCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 30836 0.69 0.449619
Target:  5'- uGCCCUUGAUgGCcacGCGGCaGAGCuGCu -3'
miRNA:   3'- gUGGGAGCUGgCG---CGCUGcCUUGuCG- -5'
31750 3' -58.1 NC_006938.1 + 30731 0.66 0.654074
Target:  5'- uGCCCUCGAgCCaCGCGgccagcuugGCGGggUugucGGCc -3'
miRNA:   3'- gUGGGAGCU-GGcGCGC---------UGCCuuG----UCG- -5'
31750 3' -58.1 NC_006938.1 + 29604 0.68 0.528417
Target:  5'- uGCuCCUCG-UUGaucCGGCGGAGCAGCa -3'
miRNA:   3'- gUG-GGAGCuGGCgc-GCUGCCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 29248 0.66 0.622342
Target:  5'- aACCUgcacgaggcaaUCGGCCGCGCcguuuGCGGc-CAGCg -3'
miRNA:   3'- gUGGG-----------AGCUGGCGCGc----UGCCuuGUCG- -5'
31750 3' -58.1 NC_006938.1 + 27799 0.69 0.440221
Target:  5'- gACCC-CGACaagaacgcguaCGCGUGGCGGAAgAGg -3'
miRNA:   3'- gUGGGaGCUG-----------GCGCGCUGCCUUgUCg -5'
31750 3' -58.1 NC_006938.1 + 27635 0.71 0.336909
Target:  5'- --gUCUCGGCCGCGCuGGC-GAACGGUg -3'
miRNA:   3'- gugGGAGCUGGCGCG-CUGcCUUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 26814 0.66 0.632923
Target:  5'- gCACUCUCGugGCCGUcaaGGCGGucaugAACGGCa -3'
miRNA:   3'- -GUGGGAGC--UGGCGcg-CUGCC-----UUGUCG- -5'
31750 3' -58.1 NC_006938.1 + 25594 0.71 0.344812
Target:  5'- aACCCUCGGCCGUGa-ACGGGuuGCucGCg -3'
miRNA:   3'- gUGGGAGCUGGCGCgcUGCCU--UGu-CG- -5'
31750 3' -58.1 NC_006938.1 + 25068 0.67 0.58018
Target:  5'- aCACUC-CGGCCGUcaggGCGAUGcGGuCAGCg -3'
miRNA:   3'- -GUGGGaGCUGGCG----CGCUGC-CUuGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.