miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31771 3' -58 NC_006938.1 + 60784 0.66 0.644142
Target:  5'- aGGAGAcaacGCgGCCACUGUCg-CACCGg -3'
miRNA:   3'- gCUUCUa---CGgUGGUGGCGGagGUGGC- -5'
31771 3' -58 NC_006938.1 + 52444 0.66 0.644142
Target:  5'- gGucGGUGUCgggcgagaACCACuCGCCUCCuGCCa -3'
miRNA:   3'- gCuuCUACGG--------UGGUG-GCGGAGG-UGGc -5'
31771 3' -58 NC_006938.1 + 44206 0.66 0.644142
Target:  5'- gGAAGAggaaCACCuuGCCcuCCUCCGCCGc -3'
miRNA:   3'- gCUUCUacg-GUGG--UGGc-GGAGGUGGC- -5'
31771 3' -58 NC_006938.1 + 2661 0.66 0.633481
Target:  5'- aCGAGGGUccgaacggaaGCCggggaACCACCGCCaaccugucCCGCCu -3'
miRNA:   3'- -GCUUCUA----------CGG-----UGGUGGCGGa-------GGUGGc -5'
31771 3' -58 NC_006938.1 + 29167 0.66 0.633481
Target:  5'- cCGAGucauAUGCCACCGCUGgCCUgUgACCGa -3'
miRNA:   3'- -GCUUc---UACGGUGGUGGC-GGA-GgUGGC- -5'
31771 3' -58 NC_006938.1 + 43820 0.66 0.633481
Target:  5'- uGuGGAUGCuCACgGCCGUCacacCCACCu -3'
miRNA:   3'- gCuUCUACG-GUGgUGGCGGa---GGUGGc -5'
31771 3' -58 NC_006938.1 + 59786 0.66 0.633481
Target:  5'- gGgcGAUGCCACCcUUGCCaCCGCg- -3'
miRNA:   3'- gCuuCUACGGUGGuGGCGGaGGUGgc -5'
31771 3' -58 NC_006938.1 + 25950 0.66 0.633481
Target:  5'- uGAGGGcUGCCACCugUcgCUCCAgCGg -3'
miRNA:   3'- gCUUCU-ACGGUGGugGcgGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 49609 0.66 0.612164
Target:  5'- cCGAgGGAUGCCuCCAagguUCGCCgagaUCACCGa -3'
miRNA:   3'- -GCU-UCUACGGuGGU----GGCGGa---GGUGGC- -5'
31771 3' -58 NC_006938.1 + 17473 0.66 0.612164
Target:  5'- gGggGAUGUCguuuccggccguGCCGuCUGCCUgggCCACCa -3'
miRNA:   3'- gCuuCUACGG------------UGGU-GGCGGA---GGUGGc -5'
31771 3' -58 NC_006938.1 + 19295 0.66 0.612164
Target:  5'- aGAGGAgcCCACCGCCaCCUCCcuugaagaggGCCu -3'
miRNA:   3'- gCUUCUacGGUGGUGGcGGAGG----------UGGc -5'
31771 3' -58 NC_006938.1 + 42431 0.66 0.601526
Target:  5'- cCGGAGcgacGCCuGCCACUcCCUCgGCCGg -3'
miRNA:   3'- -GCUUCua--CGG-UGGUGGcGGAGgUGGC- -5'
31771 3' -58 NC_006938.1 + 47449 0.66 0.601526
Target:  5'- aGAAGGgcGUCAUCACCGaCCUCgaCGCCu -3'
miRNA:   3'- gCUUCUa-CGGUGGUGGC-GGAG--GUGGc -5'
31771 3' -58 NC_006938.1 + 56398 0.66 0.601526
Target:  5'- uGAGcucgGCCAuUCGCCGUCUCCAgCGg -3'
miRNA:   3'- gCUUcua-CGGU-GGUGGCGGAGGUgGC- -5'
31771 3' -58 NC_006938.1 + 267 0.66 0.601526
Target:  5'- gGAGGcaccgcGUGCCACCAgCUGCUUCUgucgugccagcgACCGa -3'
miRNA:   3'- gCUUC------UACGGUGGU-GGCGGAGG------------UGGC- -5'
31771 3' -58 NC_006938.1 + 31899 0.66 0.600463
Target:  5'- gGAAcuugGCCGCCGCCcugucgucaaagcGCCUCUGCCc -3'
miRNA:   3'- gCUUcua-CGGUGGUGG-------------CGGAGGUGGc -5'
31771 3' -58 NC_006938.1 + 41485 0.66 0.590912
Target:  5'- uCGggGAcuuUGCCcagGCCGCCGCgcagCCGCUc -3'
miRNA:   3'- -GCuuCU---ACGG---UGGUGGCGga--GGUGGc -5'
31771 3' -58 NC_006938.1 + 53721 0.67 0.56979
Target:  5'- aGGAGuUGCaCGCCAgCGUCUCCaggACCu -3'
miRNA:   3'- gCUUCuACG-GUGGUgGCGGAGG---UGGc -5'
31771 3' -58 NC_006938.1 + 15643 0.67 0.56979
Target:  5'- ----cGUGUCAUCACCGCCUaugaagaugaacUCGCCGg -3'
miRNA:   3'- gcuucUACGGUGGUGGCGGA------------GGUGGC- -5'
31771 3' -58 NC_006938.1 + 14537 0.67 0.56979
Target:  5'- aCGAGuGUGCCGCCAUUGgCUCgGCgGu -3'
miRNA:   3'- -GCUUcUACGGUGGUGGCgGAGgUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.