miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 50044 0.66 0.596622
Target:  5'- -aACGCgagaGGCCuuuguGCC-CGGCGCGGguGGCu -3'
miRNA:   3'- caUGCGg---UUGG-----UGGaGCCGCGCC--UCG- -5'
31783 5' -58.7 NC_006938.1 + 37597 0.66 0.596622
Target:  5'- -aGCGgCGGCgGCCUCGaGCuCGGGGa -3'
miRNA:   3'- caUGCgGUUGgUGGAGC-CGcGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 55200 0.66 0.596622
Target:  5'- -gACGCaggaaggauCCAUCaggUCGGCGCGGAuacGCg -3'
miRNA:   3'- caUGCGguu------GGUGG---AGCCGCGCCU---CG- -5'
31783 5' -58.7 NC_006938.1 + 12618 0.66 0.586045
Target:  5'- -cAgGCCuGCCggaACCUCGG-GCcGGGGCu -3'
miRNA:   3'- caUgCGGuUGG---UGGAGCCgCG-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 44132 0.66 0.579715
Target:  5'- -cGCGCCAgucccgguuGCCACCUCcauucccgccgaGGcCagaccgaugaacaucGCGGAGCg -3'
miRNA:   3'- caUGCGGU---------UGGUGGAG------------CC-G---------------CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 10411 0.66 0.575503
Target:  5'- gGUGCaGCCcuuggcACCGCCcucccaGGCGCGGaAGUa -3'
miRNA:   3'- -CAUG-CGGu-----UGGUGGag----CCGCGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 46966 0.66 0.575503
Target:  5'- --cCGCCGACCGCCgacgagugGGCGCGcGucaccguGCg -3'
miRNA:   3'- cauGCGGUUGGUGGag------CCGCGC-Cu------CG- -5'
31783 5' -58.7 NC_006938.1 + 63092 0.66 0.575503
Target:  5'- cGUGgGCUGucGCCGCUggaauaCGGCaGUGGGGCa -3'
miRNA:   3'- -CAUgCGGU--UGGUGGa-----GCCG-CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 42406 0.66 0.565005
Target:  5'- -gGCGUCGAguucuUCGCCgacgCGGC-CGGAGCn -3'
miRNA:   3'- caUGCGGUU-----GGUGGa---GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 11966 0.66 0.554558
Target:  5'- --gUGCC-ACCGCCUCagccGCGUgugGGAGCu -3'
miRNA:   3'- cauGCGGuUGGUGGAGc---CGCG---CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 19925 0.66 0.554558
Target:  5'- -aACGgCuuCC-CCgUCGGCGUGGAGg -3'
miRNA:   3'- caUGCgGuuGGuGG-AGCCGCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 33771 0.66 0.554558
Target:  5'- --cCGCCAACgACCcCGGC-UGGaAGCa -3'
miRNA:   3'- cauGCGGUUGgUGGaGCCGcGCC-UCG- -5'
31783 5' -58.7 NC_006938.1 + 35728 0.66 0.548317
Target:  5'- -cGCGCCA--CACCUCGGCGgacuucuccaggccuCcGAGCg -3'
miRNA:   3'- caUGCGGUugGUGGAGCCGC---------------GcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 50998 0.66 0.544168
Target:  5'- -cAgGCCcucGGCCGCCUCgcggaaGGCGuuGAGCa -3'
miRNA:   3'- caUgCGG---UUGGUGGAG------CCGCgcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 57510 0.66 0.544168
Target:  5'- aGUuCGCCAACCgauACCUgCcaUGCGGAGCc -3'
miRNA:   3'- -CAuGCGGUUGG---UGGA-GccGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 29781 0.66 0.544168
Target:  5'- -gGCaGCCAuCCGgCUCGGCcgaGGGGCc -3'
miRNA:   3'- caUG-CGGUuGGUgGAGCCGcg-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 11599 0.67 0.533843
Target:  5'- -gAUGUCGGCCGCCUUGcGCGCcucGCg -3'
miRNA:   3'- caUGCGGUUGGUGGAGC-CGCGccuCG- -5'
31783 5' -58.7 NC_006938.1 + 21083 0.67 0.533843
Target:  5'- -cACGaCGACCACCUucCGGCcccagcacgaGCGGAuGCu -3'
miRNA:   3'- caUGCgGUUGGUGGA--GCCG----------CGCCU-CG- -5'
31783 5' -58.7 NC_006938.1 + 20316 0.67 0.523588
Target:  5'- -gACGUCAACCACauccaUGGCugGCuGGAGCu -3'
miRNA:   3'- caUGCGGUUGGUGga---GCCG--CG-CCUCG- -5'
31783 5' -58.7 NC_006938.1 + 29352 0.67 0.523588
Target:  5'- --cCGCUGGCCGCaaaCGGCGCGGccgauuGCc -3'
miRNA:   3'- cauGCGGUUGGUGga-GCCGCGCCu-----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.