miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 5' -56.3 NC_006938.1 + 38603 0.69 0.472358
Target:  5'- gGGCGGCGAUGUCcgcguaggacacuccGGCCGUCagggCGAu -3'
miRNA:   3'- -CCGUCGUUACGGuu-------------CCGGCAGga--GCU- -5'
31790 5' -56.3 NC_006938.1 + 37918 0.68 0.579747
Target:  5'- gGGCGGCGAgcgggcggugGCCAGGGCgGUggaggCgUCGGc -3'
miRNA:   3'- -CCGUCGUUa---------CGGUUCCGgCA-----GgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 37619 0.68 0.566855
Target:  5'- uGGCGGCcucguccagcuUGCCAGcGGCgGcggCCUCGAg -3'
miRNA:   3'- -CCGUCGuu---------ACGGUU-CCGgCa--GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 31851 0.66 0.698816
Target:  5'- cGUcGCGcgGUCGAGGgUGUCCUgGAg -3'
miRNA:   3'- cCGuCGUuaCGGUUCCgGCAGGAgCU- -5'
31790 5' -56.3 NC_006938.1 + 29247 0.68 0.562574
Target:  5'- cGGUGGCAuaugacucgGCCGAGGCCccucuugugcagaucGaugUCCUCGAa -3'
miRNA:   3'- -CCGUCGUua-------CGGUUCCGG---------------C---AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 25890 0.67 0.623077
Target:  5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3'
miRNA:   3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 24860 0.73 0.29957
Target:  5'- uGGCGGCGAUcGCCGcgcccuucuugcuGGGCCGgaagcCCUUGGg -3'
miRNA:   3'- -CCGUCGUUA-CGGU-------------UCCGGCa----GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 22505 0.66 0.677334
Target:  5'- uGCcGCGcAUGaCCAGGGCCGU-CUCGc -3'
miRNA:   3'- cCGuCGU-UAC-GGUUCCGGCAgGAGCu -5'
31790 5' -56.3 NC_006938.1 + 22027 0.66 0.688101
Target:  5'- cGGCGGCAAgaUCAAGGUCGgCUaCGAg -3'
miRNA:   3'- -CCGUCGUUacGGUUCCGGCaGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 18594 0.66 0.677334
Target:  5'- uGCGGC-AUGCCc-GGCgCGUCCgaggCGGc -3'
miRNA:   3'- cCGUCGuUACGGuuCCG-GCAGGa---GCU- -5'
31790 5' -56.3 NC_006938.1 + 17911 0.67 0.632864
Target:  5'- ---cGC-AUGCCAuaggcgcGGGCCG-CCUCGAu -3'
miRNA:   3'- ccguCGuUACGGU-------UCCGGCaGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 17287 0.74 0.258494
Target:  5'- cGCGGCcauUGCCAAGGCCaUCCaCGAc -3'
miRNA:   3'- cCGUCGuu-ACGGUUCCGGcAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 17010 0.68 0.558302
Target:  5'- cGCaAGC--UGCuCGAGGCggaGUCCUCGAu -3'
miRNA:   3'- cCG-UCGuuACG-GUUCCGg--CAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 16966 0.75 0.233344
Target:  5'- uGCugGGCcuUGCgGAGGUCGUCCUCGGg -3'
miRNA:   3'- cCG--UCGuuACGgUUCCGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 14619 0.68 0.590536
Target:  5'- uGGCuGGC--UGCCGAcGGUCGggaaCCUCGAg -3'
miRNA:   3'- -CCG-UCGuuACGGUU-CCGGCa---GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 13981 0.66 0.666526
Target:  5'- uGGCgcuGGCgAAUGUagaacuCGAGGUCGUCgUCGAg -3'
miRNA:   3'- -CCG---UCG-UUACG------GUUCCGGCAGgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 11576 0.7 0.455561
Target:  5'- gGGCGGCAGgugGCgGAGGCCuuuggcuUCCgUCGGg -3'
miRNA:   3'- -CCGUCGUUa--CGgUUCCGGc------AGG-AGCU- -5'
31790 5' -56.3 NC_006938.1 + 10671 0.67 0.633951
Target:  5'- aGGaCGGCAAggugGUCGAGGgCGcaaUCCUCGc -3'
miRNA:   3'- -CC-GUCGUUa---CGGUUCCgGC---AGGAGCu -5'
31790 5' -56.3 NC_006938.1 + 8929 0.69 0.525538
Target:  5'- cGCAGCuccuuguAGUGCUcuucGCCGUCCUUGAg -3'
miRNA:   3'- cCGUCG-------UUACGGuuc-CGGCAGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 7576 0.67 0.601361
Target:  5'- uGGCcaAGCAccugGCCGAGGgCGU-CUCGGg -3'
miRNA:   3'- -CCG--UCGUua--CGGUUCCgGCAgGAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.