miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31791 3' -55.1 NC_006938.1 + 30938 0.66 0.784595
Target:  5'- aCUCAcuccgucuGGcGGCCAAGaaGGACGCCgCCu -3'
miRNA:   3'- cGAGUu-------CCuCCGGUUC--CUUGCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 37481 0.66 0.784595
Target:  5'- uGUUgAGGGAGGUCGucAGGcgaucGACGUCUgCCu -3'
miRNA:   3'- -CGAgUUCCUCCGGU--UCC-----UUGCGGA-GG- -5'
31791 3' -55.1 NC_006938.1 + 55888 0.66 0.784595
Target:  5'- aGCgagCGAGGGcuccGGCCAGGuGcccggacaccGugGCCUCUg -3'
miRNA:   3'- -CGa--GUUCCU----CCGGUUC-C----------UugCGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 40579 0.66 0.774715
Target:  5'- -aUCcuGGAGGCCucggucGAGGAccucAUGCgCUCCc -3'
miRNA:   3'- cgAGuuCCUCCGG------UUCCU----UGCG-GAGG- -5'
31791 3' -55.1 NC_006938.1 + 55411 0.66 0.774715
Target:  5'- cGCUCGccgcAGGcGGCCuGGGcuucuCGCC-CCa -3'
miRNA:   3'- -CGAGU----UCCuCCGGuUCCuu---GCGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 48404 0.66 0.774715
Target:  5'- -aUCGAGGcGGCCAcGGccuacAACaCCUCCu -3'
miRNA:   3'- cgAGUUCCuCCGGUuCC-----UUGcGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 24082 0.66 0.774715
Target:  5'- aUUCAucGGGAGGgaCAAGuGAGgGaCCUCCg -3'
miRNA:   3'- cGAGU--UCCUCCg-GUUC-CUUgC-GGAGG- -5'
31791 3' -55.1 NC_006938.1 + 7577 0.66 0.774715
Target:  5'- gGC-CAAGcaccuGGCCGAGG-GCGUCUCg -3'
miRNA:   3'- -CGaGUUCcu---CCGGUUCCuUGCGGAGg -5'
31791 3' -55.1 NC_006938.1 + 55659 0.66 0.76469
Target:  5'- gGCggCAAGGGcGGCCuggGAGGAGgGCC-Ca -3'
miRNA:   3'- -CGa-GUUCCU-CCGG---UUCCUUgCGGaGg -5'
31791 3' -55.1 NC_006938.1 + 47854 0.66 0.76469
Target:  5'- gGCUCc----GGCCgGAGGAGagGCCUCCa -3'
miRNA:   3'- -CGAGuuccuCCGG-UUCCUUg-CGGAGG- -5'
31791 3' -55.1 NC_006938.1 + 42533 0.66 0.76469
Target:  5'- --gCAAGGGuuccGGCCGAGGGaguggcagGCGUcgCUCCg -3'
miRNA:   3'- cgaGUUCCU----CCGGUUCCU--------UGCG--GAGG- -5'
31791 3' -55.1 NC_006938.1 + 35650 0.66 0.754532
Target:  5'- cGC-CGAGGuguGGCgCGAGGAgAUGCUgUCCg -3'
miRNA:   3'- -CGaGUUCCu--CCG-GUUCCU-UGCGG-AGG- -5'
31791 3' -55.1 NC_006938.1 + 61009 0.66 0.754532
Target:  5'- aCUCu-GGAGuGCUGAGGucCGCgUCCu -3'
miRNA:   3'- cGAGuuCCUC-CGGUUCCuuGCGgAGG- -5'
31791 3' -55.1 NC_006938.1 + 38256 0.66 0.744251
Target:  5'- --aCAAGGGGaGCCAAGuGGACcauGCCaCCg -3'
miRNA:   3'- cgaGUUCCUC-CGGUUC-CUUG---CGGaGG- -5'
31791 3' -55.1 NC_006938.1 + 8832 0.66 0.733858
Target:  5'- cCUCAAGGAcGGCgaagagcacuaCAAGGAGCugcgagagauCCUCCu -3'
miRNA:   3'- cGAGUUCCU-CCG-----------GUUCCUUGc---------GGAGG- -5'
31791 3' -55.1 NC_006938.1 + 61386 0.66 0.733858
Target:  5'- cCUCGAcGGGGUCAgccuAGGAACGCagaCCa -3'
miRNA:   3'- cGAGUUcCUCCGGU----UCCUUGCGga-GG- -5'
31791 3' -55.1 NC_006938.1 + 42600 0.67 0.723366
Target:  5'- gGCgUCGAuGGAGuuCGAGGGAacCGCCUCg -3'
miRNA:   3'- -CG-AGUU-CCUCcgGUUCCUU--GCGGAGg -5'
31791 3' -55.1 NC_006938.1 + 41609 0.67 0.723366
Target:  5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3'
miRNA:   3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5'
31791 3' -55.1 NC_006938.1 + 16959 0.67 0.723366
Target:  5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3'
miRNA:   3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5'
31791 3' -55.1 NC_006938.1 + 28473 0.67 0.723366
Target:  5'- cCUCGAGaucGAcccGGCCAagaaggAGGAGCuCCUCCg -3'
miRNA:   3'- cGAGUUC---CU---CCGGU------UCCUUGcGGAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.