Results 1 - 20 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31791 | 3' | -55.1 | NC_006938.1 | + | 30938 | 0.66 | 0.784595 |
Target: 5'- aCUCAcuccgucuGGcGGCCAAGaaGGACGCCgCCu -3' miRNA: 3'- cGAGUu-------CCuCCGGUUC--CUUGCGGaGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 37481 | 0.66 | 0.784595 |
Target: 5'- uGUUgAGGGAGGUCGucAGGcgaucGACGUCUgCCu -3' miRNA: 3'- -CGAgUUCCUCCGGU--UCC-----UUGCGGA-GG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 55888 | 0.66 | 0.784595 |
Target: 5'- aGCgagCGAGGGcuccGGCCAGGuGcccggacaccGugGCCUCUg -3' miRNA: 3'- -CGa--GUUCCU----CCGGUUC-C----------UugCGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 40579 | 0.66 | 0.774715 |
Target: 5'- -aUCcuGGAGGCCucggucGAGGAccucAUGCgCUCCc -3' miRNA: 3'- cgAGuuCCUCCGG------UUCCU----UGCG-GAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 55411 | 0.66 | 0.774715 |
Target: 5'- cGCUCGccgcAGGcGGCCuGGGcuucuCGCC-CCa -3' miRNA: 3'- -CGAGU----UCCuCCGGuUCCuu---GCGGaGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 48404 | 0.66 | 0.774715 |
Target: 5'- -aUCGAGGcGGCCAcGGccuacAACaCCUCCu -3' miRNA: 3'- cgAGUUCCuCCGGUuCC-----UUGcGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 24082 | 0.66 | 0.774715 |
Target: 5'- aUUCAucGGGAGGgaCAAGuGAGgGaCCUCCg -3' miRNA: 3'- cGAGU--UCCUCCg-GUUC-CUUgC-GGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 7577 | 0.66 | 0.774715 |
Target: 5'- gGC-CAAGcaccuGGCCGAGG-GCGUCUCg -3' miRNA: 3'- -CGaGUUCcu---CCGGUUCCuUGCGGAGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 55659 | 0.66 | 0.76469 |
Target: 5'- gGCggCAAGGGcGGCCuggGAGGAGgGCC-Ca -3' miRNA: 3'- -CGa-GUUCCU-CCGG---UUCCUUgCGGaGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 47854 | 0.66 | 0.76469 |
Target: 5'- gGCUCc----GGCCgGAGGAGagGCCUCCa -3' miRNA: 3'- -CGAGuuccuCCGG-UUCCUUg-CGGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 42533 | 0.66 | 0.76469 |
Target: 5'- --gCAAGGGuuccGGCCGAGGGaguggcagGCGUcgCUCCg -3' miRNA: 3'- cgaGUUCCU----CCGGUUCCU--------UGCG--GAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 35650 | 0.66 | 0.754532 |
Target: 5'- cGC-CGAGGuguGGCgCGAGGAgAUGCUgUCCg -3' miRNA: 3'- -CGaGUUCCu--CCG-GUUCCU-UGCGG-AGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 61009 | 0.66 | 0.754532 |
Target: 5'- aCUCu-GGAGuGCUGAGGucCGCgUCCu -3' miRNA: 3'- cGAGuuCCUC-CGGUUCCuuGCGgAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 38256 | 0.66 | 0.744251 |
Target: 5'- --aCAAGGGGaGCCAAGuGGACcauGCCaCCg -3' miRNA: 3'- cgaGUUCCUC-CGGUUC-CUUG---CGGaGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 8832 | 0.66 | 0.733858 |
Target: 5'- cCUCAAGGAcGGCgaagagcacuaCAAGGAGCugcgagagauCCUCCu -3' miRNA: 3'- cGAGUUCCU-CCG-----------GUUCCUUGc---------GGAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 61386 | 0.66 | 0.733858 |
Target: 5'- cCUCGAcGGGGUCAgccuAGGAACGCagaCCa -3' miRNA: 3'- cGAGUUcCUCCGGU----UCCUUGCGga-GG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 42600 | 0.67 | 0.723366 |
Target: 5'- gGCgUCGAuGGAGuuCGAGGGAacCGCCUCg -3' miRNA: 3'- -CG-AGUU-CCUCcgGUUCCUU--GCGGAGg -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 41609 | 0.67 | 0.723366 |
Target: 5'- gGCUCcaGAGGAcGCCAcgucagcaGGGAGCGgCUgCg -3' miRNA: 3'- -CGAG--UUCCUcCGGU--------UCCUUGCgGAgG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 16959 | 0.67 | 0.723366 |
Target: 5'- cCUUgcGGAGGUCGuccucgggaguuGGGAgGCGCaCUCCa -3' miRNA: 3'- cGAGuuCCUCCGGU------------UCCU-UGCG-GAGG- -5' |
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31791 | 3' | -55.1 | NC_006938.1 | + | 28473 | 0.67 | 0.723366 |
Target: 5'- cCUCGAGaucGAcccGGCCAagaaggAGGAGCuCCUCCg -3' miRNA: 3'- cGAGUUC---CU---CCGGU------UCCUUGcGGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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