Results 1 - 20 of 41 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 20733 | 0.66 | 0.810185 |
Target: 5'- cCGGAggcaggugucGCUGaUgGAGGcGGACAAGGUg -3' miRNA: 3'- aGCCU----------CGACcAgCUCCuCUUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 30896 | 0.66 | 0.807367 |
Target: 5'- -aGGAGCUGGagaCGcAGGAGGcggacggagcccacGCGucGGGCc -3' miRNA: 3'- agCCUCGACCa--GC-UCCUCU--------------UGU--UCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 51775 | 0.66 | 0.80073 |
Target: 5'- -gGGAGCcGGUUGAcucgcGGAGcccaGAgAGGGCg -3' miRNA: 3'- agCCUCGaCCAGCU-----CCUC----UUgUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 31840 | 0.66 | 0.799775 |
Target: 5'- -gGGAGCUguuccgucgcgcGGUCGAGGguguccuGGAGCcggucguGGCa -3' miRNA: 3'- agCCUCGA------------CCAGCUCC-------UCUUGuu-----CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 40192 | 0.66 | 0.799775 |
Target: 5'- cCGGcGCUGuccgcGUCGAGGAagagcucGAACGuguuGGCa -3' miRNA: 3'- aGCCuCGAC-----CAGCUCCU-------CUUGUu---CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 36678 | 0.66 | 0.794973 |
Target: 5'- uUCGGAGcCUGGagagacagagcccacUgCGAGGAGAGCAu--- -3' miRNA: 3'- -AGCCUC-GACC---------------A-GCUCCUCUUGUuccg -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 30603 | 0.66 | 0.791102 |
Target: 5'- -aGG-GCUGGgagacCGAGGAGGucguCGGGaGCa -3' miRNA: 3'- agCCuCGACCa----GCUCCUCUu---GUUC-CG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 45903 | 0.66 | 0.771367 |
Target: 5'- aUCGGcgGGCUG--CGcGGAGAACGuGGCa -3' miRNA: 3'- -AGCC--UCGACcaGCuCCUCUUGUuCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 27620 | 0.67 | 0.761281 |
Target: 5'- -aGGAGCgGGUCaugagugacuggGAGuGGGAGCAGuGGUg -3' miRNA: 3'- agCCUCGaCCAG------------CUC-CUCUUGUU-CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 30836 | 0.67 | 0.761281 |
Target: 5'- cUGGAGgaGGUCGccGAGGucucUggGGCa -3' miRNA: 3'- aGCCUCgaCCAGCucCUCUu---GuuCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 17630 | 0.67 | 0.761281 |
Target: 5'- -gGGAGCUGGUCGGagccaaccucGGcuacgaccuGGACuGGGCc -3' miRNA: 3'- agCCUCGACCAGCU----------CCu--------CUUGuUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 9695 | 0.67 | 0.761281 |
Target: 5'- cCGGGccaucuacccGCUGuUCGAgcaGGAGAAgGAGGCc -3' miRNA: 3'- aGCCU----------CGACcAGCU---CCUCUUgUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 9879 | 0.67 | 0.740731 |
Target: 5'- gUC-GAGCUGGcCcAGGAGAA--GGGCg -3' miRNA: 3'- -AGcCUCGACCaGcUCCUCUUguUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 50480 | 0.67 | 0.740731 |
Target: 5'- gCGGAGCaGGUUGAuGcGAcGAGCGGuGGCc -3' miRNA: 3'- aGCCUCGaCCAGCU-C-CU-CUUGUU-CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 57369 | 0.67 | 0.740731 |
Target: 5'- gUCcGAGCUgauagaGGUCGGugacGAGAGCGAGGUc -3' miRNA: 3'- -AGcCUCGA------CCAGCUc---CUCUUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 57751 | 0.67 | 0.731337 |
Target: 5'- gUCGGGGCggaccugacccuggaGGUgGAGGGGAucucCGAGaGCu -3' miRNA: 3'- -AGCCUCGa--------------CCAgCUCCUCUu---GUUC-CG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 47955 | 0.67 | 0.719749 |
Target: 5'- gUCGGgucGGCcgUGGUCGAcugcaggacGGGGAGCGagccgccuguguAGGCg -3' miRNA: 3'- -AGCC---UCG--ACCAGCU---------CCUCUUGU------------UCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 26072 | 0.67 | 0.719749 |
Target: 5'- gUGGcAGCUGGUCGcgcGGAGGAguccccGGCa -3' miRNA: 3'- aGCC-UCGACCAGCu--CCUCUUguu---CCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 46673 | 0.67 | 0.719749 |
Target: 5'- gUCGGcAGCUGG----GGAGcGCGGGGCc -3' miRNA: 3'- -AGCC-UCGACCagcuCCUCuUGUUCCG- -5' |
|||||||
31792 | 5' | -54.6 | NC_006938.1 | + | 48779 | 0.67 | 0.709124 |
Target: 5'- cUGG-GCgaUGGUCGAcucaacguGGAGcagGACGAGGCa -3' miRNA: 3'- aGCCuCG--ACCAGCU--------CCUC---UUGUUCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home