miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31801 5' -61 NC_006938.1 + 30194 0.66 0.461783
Target:  5'- cCCAGGCAGaacucccaGCCuCCGCCGaaccgacCCAUGCc -3'
miRNA:   3'- cGGUUCGUC--------CGGcGGCGGU-------GGUACGc -5'
31801 5' -61 NC_006938.1 + 63449 0.66 0.45987
Target:  5'- cGCCAaggcggugaAGCAGGCCGCuCGCgagcugaacgucccCAUCGaGUGg -3'
miRNA:   3'- -CGGU---------UCGUCCGGCG-GCG--------------GUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 63629 0.66 0.453206
Target:  5'- aGCCGGGUgugucuuccaGGGCaGCUGCCA--GUGCGg -3'
miRNA:   3'- -CGGUUCG----------UCCGgCGGCGGUggUACGC- -5'
31801 5' -61 NC_006938.1 + 55749 0.66 0.443778
Target:  5'- gGCCcuccuccCAGGCCGCCcuuGCCGCCuccGCu -3'
miRNA:   3'- -CGGuuc----GUCCGGCGG---CGGUGGua-CGc -5'
31801 5' -61 NC_006938.1 + 10675 0.66 0.443778
Target:  5'- cGgCAAGguGGUCGagggcgcaauccUCGCCACCGaGCGc -3'
miRNA:   3'- -CgGUUCguCCGGC------------GGCGGUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 16380 0.66 0.434462
Target:  5'- uGCUucGCGGGCCagggGCUGUCGCCGacccaGCGc -3'
miRNA:   3'- -CGGuuCGUCCGG----CGGCGGUGGUa----CGC- -5'
31801 5' -61 NC_006938.1 + 6871 0.66 0.434462
Target:  5'- gGCCuuGGCcucGCCGCCaGCgACCAUGUc -3'
miRNA:   3'- -CGGu-UCGuc-CGGCGG-CGgUGGUACGc -5'
31801 5' -61 NC_006938.1 + 18622 0.66 0.434462
Target:  5'- uGCUggGaguagucgaGGGCCGCCcagagGCCACCGU-CGu -3'
miRNA:   3'- -CGGuuCg--------UCCGGCGG-----CGGUGGUAcGC- -5'
31801 5' -61 NC_006938.1 + 411 0.66 0.433537
Target:  5'- gGCUuGGCA-GCCGUCGCCAUCuuggguaucaucaGUGCa -3'
miRNA:   3'- -CGGuUCGUcCGGCGGCGGUGG-------------UACGc -5'
31801 5' -61 NC_006938.1 + 50936 0.66 0.43169
Target:  5'- uGCCGAGCuGGCggaGCuCGCC-CCGcgucacacccaggcUGCGa -3'
miRNA:   3'- -CGGUUCGuCCGg--CG-GCGGuGGU--------------ACGC- -5'
31801 5' -61 NC_006938.1 + 45286 0.66 0.42526
Target:  5'- cGUCAAGaGGGUCG-CGCCAuuguCUAUGCGg -3'
miRNA:   3'- -CGGUUCgUCCGGCgGCGGU----GGUACGC- -5'
31801 5' -61 NC_006938.1 + 44715 0.66 0.416176
Target:  5'- uGCaucGUGGGaCUGCCGUCGCC-UGCGa -3'
miRNA:   3'- -CGguuCGUCC-GGCGGCGGUGGuACGC- -5'
31801 5' -61 NC_006938.1 + 51599 0.66 0.416176
Target:  5'- cGCCGGGCAGGuuGUU-CCACgCG-GCGa -3'
miRNA:   3'- -CGGUUCGUCCggCGGcGGUG-GUaCGC- -5'
31801 5' -61 NC_006938.1 + 31137 0.66 0.416176
Target:  5'- cGCCGGGaCAuaGCCGUCGCCcuucuCCAcGCGg -3'
miRNA:   3'- -CGGUUC-GUc-CGGCGGCGGu----GGUaCGC- -5'
31801 5' -61 NC_006938.1 + 6213 0.66 0.416176
Target:  5'- aGCCcguGGCuccGGCauaGUCGCC-CCAUGCc -3'
miRNA:   3'- -CGGu--UCGu--CCGg--CGGCGGuGGUACGc -5'
31801 5' -61 NC_006938.1 + 29492 0.66 0.416176
Target:  5'- uGCCAGgcgcGCAGGCCGUCGUgaggaggaACC-UGUGa -3'
miRNA:   3'- -CGGUU----CGUCCGGCGGCGg-------UGGuACGC- -5'
31801 5' -61 NC_006938.1 + 42891 0.66 0.416176
Target:  5'- cCCAGGaCAGGCC-UUGCCuCCAUcGCGa -3'
miRNA:   3'- cGGUUC-GUCCGGcGGCGGuGGUA-CGC- -5'
31801 5' -61 NC_006938.1 + 46249 0.66 0.416176
Target:  5'- cUCAAGCAGGCCacgGCgGaguaCGCgGUGCGc -3'
miRNA:   3'- cGGUUCGUCCGG---CGgCg---GUGgUACGC- -5'
31801 5' -61 NC_006938.1 + 46556 0.67 0.407211
Target:  5'- uGCCuugucuGCcuGGGCCGCUGUCAUCGaGUGa -3'
miRNA:   3'- -CGGuu----CG--UCCGGCGGCGGUGGUaCGC- -5'
31801 5' -61 NC_006938.1 + 41483 0.67 0.407211
Target:  5'- cGUCGGGgacuuugccCAGGCCGCCGCgcaGCCGcucccUGCu -3'
miRNA:   3'- -CGGUUC---------GUCCGGCGGCGg--UGGU-----ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.