miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31813 5' -55.2 NC_006938.1 + 51147 0.66 0.768638
Target:  5'- uUGCCAuucCGGCcgCGaucgucgcguuccgcGCGCuGACGGCu -3'
miRNA:   3'- cACGGUu--GCCGuaGU---------------UGCGcCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 48457 0.66 0.764594
Target:  5'- aGUGCCGACGGUcucCGACa-GGACGcGCu -3'
miRNA:   3'- -CACGGUUGCCGua-GUUGcgCCUGC-UG- -5'
31813 5' -55.2 NC_006938.1 + 50996 0.66 0.764594
Target:  5'- -gGCCcuCGGCcgCcuCGCGGAaGGCg -3'
miRNA:   3'- caCGGuuGCCGuaGuuGCGCCUgCUG- -5'
31813 5' -55.2 NC_006938.1 + 40087 0.66 0.764594
Target:  5'- aUGCCAACacguucgaGCucuuccUCGACGCGGACaGCg -3'
miRNA:   3'- cACGGUUGc-------CGu-----AGUUGCGCCUGcUG- -5'
31813 5' -55.2 NC_006938.1 + 33143 0.66 0.764594
Target:  5'- -cGCCAAgGGCAU--ACGCGaGCGGg -3'
miRNA:   3'- caCGGUUgCCGUAguUGCGCcUGCUg -5'
31813 5' -55.2 NC_006938.1 + 4159 0.66 0.75439
Target:  5'- -aGCUcAUGGCcaugGUCcGgGCGGACGGCu -3'
miRNA:   3'- caCGGuUGCCG----UAGuUgCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 35688 0.66 0.75439
Target:  5'- aGUGCCcuGACGGCcuugAUCAgugccuccagucGCGCGGuCGuCg -3'
miRNA:   3'- -CACGG--UUGCCG----UAGU------------UGCGCCuGCuG- -5'
31813 5' -55.2 NC_006938.1 + 49571 0.66 0.75439
Target:  5'- -cGCgaaGACGGUgucGUCGACGgCGGcCGACu -3'
miRNA:   3'- caCGg--UUGCCG---UAGUUGC-GCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 39552 0.66 0.753363
Target:  5'- -gGCCAccgcucgcACGGUcucggccGUCGACuucuCGGACGACg -3'
miRNA:   3'- caCGGU--------UGCCG-------UAGUUGc---GCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 19051 0.66 0.744064
Target:  5'- -gGCCAuggucGCGGCGgaCGAgGCGGGCuACg -3'
miRNA:   3'- caCGGU-----UGCCGUa-GUUgCGCCUGcUG- -5'
31813 5' -55.2 NC_006938.1 + 21263 0.66 0.744064
Target:  5'- -cGCCGACccgucGCuguUCGACGCGGAgCGGa -3'
miRNA:   3'- caCGGUUGc----CGu--AGUUGCGCCU-GCUg -5'
31813 5' -55.2 NC_006938.1 + 44142 0.66 0.744064
Target:  5'- -gGCCAG-GGCAUCAggaAUGUGGcUGACu -3'
miRNA:   3'- caCGGUUgCCGUAGU---UGCGCCuGCUG- -5'
31813 5' -55.2 NC_006938.1 + 39947 0.66 0.744064
Target:  5'- gGUGCCAGCGGCcUUGGC-UGuGACGGu -3'
miRNA:   3'- -CACGGUUGCCGuAGUUGcGC-CUGCUg -5'
31813 5' -55.2 NC_006938.1 + 37777 0.66 0.744064
Target:  5'- -gGCCGAUcGCAUCuuCGagguccgcgaGGACGACg -3'
miRNA:   3'- caCGGUUGcCGUAGuuGCg---------CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 51460 0.66 0.739901
Target:  5'- cUGCUggAGCGGCGggaagaccgccugCAGCGCGG-CGAa -3'
miRNA:   3'- cACGG--UUGCCGUa------------GUUGCGCCuGCUg -5'
31813 5' -55.2 NC_006938.1 + 33731 0.66 0.733625
Target:  5'- cUGCCAccgacgucCGGCAUgCAGCa-GGACGGCa -3'
miRNA:   3'- cACGGUu-------GCCGUA-GUUGcgCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 35568 0.66 0.733625
Target:  5'- uUGCCAAgGGCG-CGACGacCGcGCGACu -3'
miRNA:   3'- cACGGUUgCCGUaGUUGC--GCcUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 3841 0.66 0.723084
Target:  5'- -cGcCCGACGaGCGUCuuggugaucugcGAgGUGGGCGACu -3'
miRNA:   3'- caC-GGUUGC-CGUAG------------UUgCGCCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 39025 0.66 0.723084
Target:  5'- aUGCCgAAUGGCAcugccgCugUGCaGGACGACg -3'
miRNA:   3'- cACGG-UUGCCGUa-----GuuGCG-CCUGCUG- -5'
31813 5' -55.2 NC_006938.1 + 11550 0.66 0.723084
Target:  5'- --uCCGugGGCGUCGcgucguguuCGuCGGGCGGCa -3'
miRNA:   3'- cacGGUugCCGUAGUu--------GC-GCCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.