miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31843 3' -55.8 NC_006938.1 + 635 0.66 0.737406
Target:  5'- aGAugCUcGCGCaGAGGCugacaGGuuGCg -3'
miRNA:   3'- aCUugGA-CGUG-CUCCGuuag-CCggCG- -5'
31843 3' -55.8 NC_006938.1 + 29888 0.66 0.737406
Target:  5'- gUGGAUCUGguCcGGGCuggccccUCGGCCGa -3'
miRNA:   3'- -ACUUGGACguGcUCCGuu-----AGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 21629 0.66 0.734283
Target:  5'- ----gCUGCugGAcGGCGgugaccagggcgacGUgGGCCGCg -3'
miRNA:   3'- acuugGACGugCU-CCGU--------------UAgCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 8795 0.66 0.726961
Target:  5'- aGAGCUU-CAgaGAGGgGAUgGGCCGUg -3'
miRNA:   3'- aCUUGGAcGUg-CUCCgUUAgCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 29526 0.66 0.726961
Target:  5'- gUGAACCUGaCGCugagaGAGGCcGUCGa-CGCg -3'
miRNA:   3'- -ACUUGGAC-GUG-----CUCCGuUAGCcgGCG- -5'
31843 3' -55.8 NC_006938.1 + 30127 0.66 0.726961
Target:  5'- cUGGGCgUucGCGCG-GGCAGUUGGaCCaGCu -3'
miRNA:   3'- -ACUUGgA--CGUGCuCCGUUAGCC-GG-CG- -5'
31843 3' -55.8 NC_006938.1 + 11616 0.66 0.726961
Target:  5'- cGGAaguaCUGCuuGuGGauGUCGGCCGCc -3'
miRNA:   3'- aCUUg---GACGugCuCCguUAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 26060 0.66 0.716424
Target:  5'- cGuACCgGCuGCGuGGCAGcUGGUCGCg -3'
miRNA:   3'- aCuUGGaCG-UGCuCCGUUaGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 33789 0.66 0.716424
Target:  5'- gGAAgCaGUACGAcGCcuAUCGGCUGCg -3'
miRNA:   3'- aCUUgGaCGUGCUcCGu-UAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 40873 0.66 0.716424
Target:  5'- uUGGACC-GCugGAGGa---CGGCCu- -3'
miRNA:   3'- -ACUUGGaCGugCUCCguuaGCCGGcg -5'
31843 3' -55.8 NC_006938.1 + 33201 0.66 0.716424
Target:  5'- cGAccGCCaGCAucuUGAGGCccucguUCGGCCGg -3'
miRNA:   3'- aCU--UGGaCGU---GCUCCGuu----AGCCGGCg -5'
31843 3' -55.8 NC_006938.1 + 52237 0.66 0.705805
Target:  5'- gGAGCUgcUGCAgGAGcUggUUGGCUGCc -3'
miRNA:   3'- aCUUGG--ACGUgCUCcGuuAGCCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 33840 0.66 0.705805
Target:  5'- gGGACgCUGU-CGAGGCGAugaUCGGUgugaUGCa -3'
miRNA:   3'- aCUUG-GACGuGCUCCGUU---AGCCG----GCG- -5'
31843 3' -55.8 NC_006938.1 + 28910 0.66 0.702605
Target:  5'- gUGAacaACUUGCACGAGcGCcggaaggcggAGUCaacaagaggcucgaGGCCGCu -3'
miRNA:   3'- -ACU---UGGACGUGCUC-CG----------UUAG--------------CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 50998 0.67 0.684366
Target:  5'- cGu-CCUGC---AGGCAGUCGGCgCGUu -3'
miRNA:   3'- aCuuGGACGugcUCCGUUAGCCG-GCG- -5'
31843 3' -55.8 NC_006938.1 + 57355 0.67 0.684366
Target:  5'- aGAauGCCUGCGCGAgcGGCucGagGGCCu- -3'
miRNA:   3'- aCU--UGGACGUGCU--CCGu-UagCCGGcg -5'
31843 3' -55.8 NC_006938.1 + 12557 0.67 0.673568
Target:  5'- uUGAACCaGCggaagGCGAucguGGCGAUCaGCaCGCg -3'
miRNA:   3'- -ACUUGGaCG-----UGCU----CCGUUAGcCG-GCG- -5'
31843 3' -55.8 NC_006938.1 + 57270 0.67 0.673568
Target:  5'- cGAGCCgcucGCGC-AGGCAuUCuucuucgaGGCCGUg -3'
miRNA:   3'- aCUUGGa---CGUGcUCCGUuAG--------CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 26115 0.67 0.651868
Target:  5'- -aGACCugauggUGCAUGuGGCAGgccacgGGCCGCg -3'
miRNA:   3'- acUUGG------ACGUGCuCCGUUag----CCGGCG- -5'
31843 3' -55.8 NC_006938.1 + 9964 0.67 0.651868
Target:  5'- aGGAgCUcCAgGAGGac-UCGGCCGCu -3'
miRNA:   3'- aCUUgGAcGUgCUCCguuAGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.