miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 3' -52 NC_006938.1 + 11053 0.66 0.903351
Target:  5'- -cCCGGCCGAUguguggcagcaagugCAGGGGaacgcggcucGUCGCGGCg -3'
miRNA:   3'- gaGGCUGGUUA---------------GUCCUU----------CAGUGUCGg -5'
31870 3' -52 NC_006938.1 + 42255 0.7 0.694936
Target:  5'- aUCgGACCcuucCAGGAccGGUCaACGGCCg -3'
miRNA:   3'- gAGgCUGGuua-GUCCU--UCAG-UGUCGG- -5'
31870 3' -52 NC_006938.1 + 42526 0.72 0.606317
Target:  5'- uUCCGGCCG---AGGGAGUgGCAGgCg -3'
miRNA:   3'- gAGGCUGGUuagUCCUUCAgUGUCgG- -5'
31870 3' -52 NC_006938.1 + 26778 0.75 0.456951
Target:  5'- uUCCGguugaaguacucGCUGAUCAGGAAGaUCGCGGUCc -3'
miRNA:   3'- gAGGC------------UGGUUAGUCCUUC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 27030 0.66 0.886182
Target:  5'- aCUCCGGagGGaCAGGcccAGGUCACgGGCCg -3'
miRNA:   3'- -GAGGCUggUUaGUCC---UUCAGUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 42500 0.67 0.870706
Target:  5'- gCUCCGGCCGcGUCGGcGAAGaacUCGacGCCg -3'
miRNA:   3'- -GAGGCUGGU-UAGUC-CUUC---AGUguCGG- -5'
31870 3' -52 NC_006938.1 + 60913 0.67 0.870706
Target:  5'- uUCCGacGCCAGaCAGGGucguGGUCGaccagacacCAGCCg -3'
miRNA:   3'- gAGGC--UGGUUaGUCCU----UCAGU---------GUCGG- -5'
31870 3' -52 NC_006938.1 + 39400 0.67 0.857595
Target:  5'- gCUCCGGguagacCCGGUucCAGGAAGUCGCgauguugagguuguuGGUCg -3'
miRNA:   3'- -GAGGCU------GGUUA--GUCCUUCAGUG---------------UCGG- -5'
31870 3' -52 NC_006938.1 + 51552 0.68 0.827734
Target:  5'- gCUCCGGCCGcgacgAGGAuGUCGaAGCCc -3'
miRNA:   3'- -GAGGCUGGUuag--UCCUuCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 8368 0.7 0.716692
Target:  5'- -gCCGACCAc-CGGGAGGUCucccucgaAGCCc -3'
miRNA:   3'- gaGGCUGGUuaGUCCUUCAGug------UCGG- -5'
31870 3' -52 NC_006938.1 + 56441 0.68 0.809012
Target:  5'- uUCCcuCCAG-CAGGAgGGUCGgAGCCg -3'
miRNA:   3'- gAGGcuGGUUaGUCCU-UCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 52867 0.67 0.845617
Target:  5'- gUCCGuCCAGUCcuugaaccGGAAGcCACGcGCCc -3'
miRNA:   3'- gAGGCuGGUUAGu-------CCUUCaGUGU-CGG- -5'
31870 3' -52 NC_006938.1 + 41447 0.66 0.893525
Target:  5'- -gCCGAUCAcaGUCAGGuccAGUC-CcGCCa -3'
miRNA:   3'- gaGGCUGGU--UAGUCCu--UCAGuGuCGG- -5'
31870 3' -52 NC_006938.1 + 17309 0.68 0.808055
Target:  5'- uCUCCG-CCAGguugcccUCGcGGAGGUgGCAGaCCa -3'
miRNA:   3'- -GAGGCuGGUU-------AGU-CCUUCAgUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 24561 0.66 0.893525
Target:  5'- cCUCCGugCAGUCuucgucccagAGGcGGUgcCACgGGCCg -3'
miRNA:   3'- -GAGGCugGUUAG----------UCCuUCA--GUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 21145 0.67 0.845617
Target:  5'- aUCCGGCCGuUCGGGAcgauugacaugAG-CACccacgGGCCg -3'
miRNA:   3'- gAGGCUGGUuAGUCCU-----------UCaGUG-----UCGG- -5'
31870 3' -52 NC_006938.1 + 45724 0.68 0.799361
Target:  5'- -cUCGAUCGGUCAGGuAGGUCgugacaaaggcgGCGGUCa -3'
miRNA:   3'- gaGGCUGGUUAGUCC-UUCAG------------UGUCGG- -5'
31870 3' -52 NC_006938.1 + 15006 0.71 0.632985
Target:  5'- cCUCCGGCCAcuucgaaacgagggaGUuuguggucgugCAGGAguAGaUCACAGCCu -3'
miRNA:   3'- -GAGGCUGGU---------------UA-----------GUCCU--UC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 45972 0.66 0.886182
Target:  5'- gUCCG-CC-GUCAGcGAGGaCAgGGCCg -3'
miRNA:   3'- gAGGCuGGuUAGUC-CUUCaGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 59238 0.67 0.870706
Target:  5'- uCUCCGGCUgc-CAGGAcaGG-CGCGGUCu -3'
miRNA:   3'- -GAGGCUGGuuaGUCCU--UCaGUGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.