miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 48438 0.65 0.811069
Target:  5'- -aGGACGCGcucgucaccgccGCCCgagccgggguucaGGCCGUCAC-GCu -3'
miRNA:   3'- ugCCUGUGU------------UGGGa------------CUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 46053 0.66 0.8092
Target:  5'- gACGGACACccaggugaaucugguGGCCCaggcaGACgG-CACGGCc -3'
miRNA:   3'- -UGCCUGUG---------------UUGGGa----CUGgCaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 48332 0.66 0.80544
Target:  5'- gACGGcCugAACCCcGGCuCGg-GCGGCg -3'
miRNA:   3'- -UGCCuGugUUGGGaCUG-GCagUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 17465 0.66 0.80544
Target:  5'- -aGGACACAGguCCCUccgugcggacgGGCgGUCACAucGCu -3'
miRNA:   3'- ugCCUGUGUU--GGGA-----------CUGgCAGUGU--CG- -5'
31870 5' -54.7 NC_006938.1 + 44047 0.66 0.795918
Target:  5'- -aGGugGCAACCggGACUGgCGCGGg -3'
miRNA:   3'- ugCCugUGUUGGgaCUGGCaGUGUCg -5'
31870 5' -54.7 NC_006938.1 + 62242 0.66 0.795918
Target:  5'- cACGGaACGCGACCaagGACgCGaacaUCAcCAGCg -3'
miRNA:   3'- -UGCC-UGUGUUGGga-CUG-GC----AGU-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 31746 0.66 0.786227
Target:  5'- uUGGcCGCcGCCCUG-UCGUCAaAGCg -3'
miRNA:   3'- uGCCuGUGuUGGGACuGGCAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 7270 0.66 0.780336
Target:  5'- cGCGGACGCGcucUCUUGugagcucggccauucGCCGUCucCAGCg -3'
miRNA:   3'- -UGCCUGUGUu--GGGAC---------------UGGCAGu-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 12599 0.66 0.776379
Target:  5'- gACuGGCGCAGuCCCgUGACCcguggGUCACuGGCg -3'
miRNA:   3'- -UGcCUGUGUU-GGG-ACUGG-----CAGUG-UCG- -5'
31870 5' -54.7 NC_006938.1 + 19784 0.66 0.776379
Target:  5'- gGCGGguccuGCAgAACCCUcggaggacaGACCGUguCGGUg -3'
miRNA:   3'- -UGCC-----UGUgUUGGGA---------CUGGCAguGUCG- -5'
31870 5' -54.7 NC_006938.1 + 59998 0.66 0.776379
Target:  5'- gUGuGACAuCGAuuuCCgUGGCCGUgACAGCg -3'
miRNA:   3'- uGC-CUGU-GUU---GGgACUGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 52900 0.66 0.766385
Target:  5'- cCGGAUccuCAGCaa-GAUCGUCACGGCc -3'
miRNA:   3'- uGCCUGu--GUUGggaCUGGCAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 14882 0.66 0.766385
Target:  5'- uCGGACACAgaGCUCgUGAUucgCGUCAUAGa -3'
miRNA:   3'- uGCCUGUGU--UGGG-ACUG---GCAGUGUCg -5'
31870 5' -54.7 NC_006938.1 + 10540 0.66 0.766385
Target:  5'- cACGGACgaguACAugCCgcugcugacgGACgGUCcCAGCa -3'
miRNA:   3'- -UGCCUG----UGUugGGa---------CUGgCAGuGUCG- -5'
31870 5' -54.7 NC_006938.1 + 40858 0.67 0.756256
Target:  5'- uCaGGCACGACCUcggagGACguUGUCACGGCc -3'
miRNA:   3'- uGcCUGUGUUGGGa----CUG--GCAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 39949 0.67 0.746002
Target:  5'- cUGGugccaGCGGCCUUGGCUGUgACGGUc -3'
miRNA:   3'- uGCCug---UGUUGGGACUGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 35594 0.67 0.746002
Target:  5'- cUGGAgGCAcugAUCaaGGCCGUCAgGGCa -3'
miRNA:   3'- uGCCUgUGU---UGGgaCUGGCAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 9758 0.67 0.746002
Target:  5'- -gGGuguCACAGCCCUcGCCaaCGCGGCc -3'
miRNA:   3'- ugCCu--GUGUUGGGAcUGGcaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 6871 0.67 0.735635
Target:  5'- -aGGGCGCugcCCCUGACCuaggacggaUCAgAGCg -3'
miRNA:   3'- ugCCUGUGuu-GGGACUGGc--------AGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 6571 0.67 0.735635
Target:  5'- -aGGcCACcuCCCaGACCGUCGCuGUc -3'
miRNA:   3'- ugCCuGUGuuGGGaCUGGCAGUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.