miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31873 5' -57.2 NC_006938.1 + 10052 0.66 0.708479
Target:  5'- aGCGGCcgauguccuccuggaGCUCCUCUggaaggaccuGGCGGACGuauUCAGa -3'
miRNA:   3'- -UGCUG---------------UGAGGAGG----------CUGCCUGCu--GGUC- -5'
31873 5' -57.2 NC_006938.1 + 14368 0.66 0.704318
Target:  5'- -aGGCGCUCUgccCCGGCGuuGugGACCu- -3'
miRNA:   3'- ugCUGUGAGGa--GGCUGC--CugCUGGuc -5'
31873 5' -57.2 NC_006938.1 + 20058 0.66 0.704318
Target:  5'- cACGuACAUguaCUUCGugGGACGGuccuCCAGg -3'
miRNA:   3'- -UGC-UGUGag-GAGGCugCCUGCU----GGUC- -5'
31873 5' -57.2 NC_006938.1 + 14592 0.66 0.698058
Target:  5'- gACG-CACUCCuccucggagaaggucUCCGACaGGAucaaucUGACCAGc -3'
miRNA:   3'- -UGCuGUGAGG---------------AGGCUG-CCU------GCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 38032 0.66 0.693873
Target:  5'- -gGACGCgagCacgCCGAgCGGAUGGCCAa -3'
miRNA:   3'- ugCUGUGa--Gga-GGCU-GCCUGCUGGUc -5'
31873 5' -57.2 NC_006938.1 + 61721 0.66 0.683373
Target:  5'- cCGGCuccCUCCUCCugGACGGggacgGCGACUAc -3'
miRNA:   3'- uGCUGu--GAGGAGG--CUGCC-----UGCUGGUc -5'
31873 5' -57.2 NC_006938.1 + 10380 0.66 0.683373
Target:  5'- uGCuACGCUCCgaUGAC-GACGACCAGu -3'
miRNA:   3'- -UGcUGUGAGGagGCUGcCUGCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 26163 0.66 0.683373
Target:  5'- -gGGgACUCCUCCG-C--GCGACCAGc -3'
miRNA:   3'- ugCUgUGAGGAGGCuGccUGCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 56296 0.66 0.662244
Target:  5'- gACGGCGUUCUUCgGcACGGGCGGCUu- -3'
miRNA:   3'- -UGCUGUGAGGAGgC-UGCCUGCUGGuc -5'
31873 5' -57.2 NC_006938.1 + 52300 0.66 0.662244
Target:  5'- gGCGGCucgaUCCUCau-CGG-CGGCCAGg -3'
miRNA:   3'- -UGCUGug--AGGAGgcuGCCuGCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 28485 0.66 0.649511
Target:  5'- cCGcCACUCCggugCCGGguugaccguguaGGGCGGCCGGa -3'
miRNA:   3'- uGCuGUGAGGa---GGCUg-----------CCUGCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 122 0.67 0.64101
Target:  5'- gUGGCACUCUccgcgUCGACGGugGucgagccaccGCCAGu -3'
miRNA:   3'- uGCUGUGAGGa----GGCUGCCugC----------UGGUC- -5'
31873 5' -57.2 NC_006938.1 + 18182 0.67 0.64101
Target:  5'- -gGACGC-CCUCCGcGCGGcCGgacACCAGc -3'
miRNA:   3'- ugCUGUGaGGAGGC-UGCCuGC---UGGUC- -5'
31873 5' -57.2 NC_006938.1 + 4673 0.67 0.64101
Target:  5'- -gGACAUgcucgCCUCUGAcaCGGugGACgAGa -3'
miRNA:   3'- ugCUGUGa----GGAGGCU--GCCugCUGgUC- -5'
31873 5' -57.2 NC_006938.1 + 55590 0.67 0.630377
Target:  5'- gGCGugGCcCCUCCGugGucgucucuUGGCCGGg -3'
miRNA:   3'- -UGCugUGaGGAGGCugCcu------GCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 38584 0.67 0.609125
Target:  5'- -gGACACUCCggCCGucaGGGCGAUgCGGu -3'
miRNA:   3'- ugCUGUGAGGa-GGCug-CCUGCUG-GUC- -5'
31873 5' -57.2 NC_006938.1 + 46959 0.68 0.587946
Target:  5'- -gGACACUCCgccgaccgCCGACGaGugGGCg-- -3'
miRNA:   3'- ugCUGUGAGGa-------GGCUGC-CugCUGguc -5'
31873 5' -57.2 NC_006938.1 + 49830 0.68 0.587946
Target:  5'- gUGGCAUUCCgcauagugUUgGAUGGAgGACCAGg -3'
miRNA:   3'- uGCUGUGAGG--------AGgCUGCCUgCUGGUC- -5'
31873 5' -57.2 NC_006938.1 + 24501 0.68 0.556456
Target:  5'- gACGACGC-CUUCaaGGCGGAgGugCAGa -3'
miRNA:   3'- -UGCUGUGaGGAGg-CUGCCUgCugGUC- -5'
31873 5' -57.2 NC_006938.1 + 58088 0.69 0.515285
Target:  5'- gACGACGCcCUUCCaaACGGACGAgaccaCCAGc -3'
miRNA:   3'- -UGCUGUGaGGAGGc-UGCCUGCU-----GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.