miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31879 5' -60.8 NC_006938.1 + 41527 0.66 0.503448
Target:  5'- aCGugGCguCCucuggaGCCCCGGCCAacuucucgGUGg -3'
miRNA:   3'- aGCugCGguGG------CGGGGCUGGUga------CAC- -5'
31879 5' -60.8 NC_006938.1 + 54493 0.66 0.503448
Target:  5'- -gGugGCC-UCGaCUCCGGCCGCgacagGUGg -3'
miRNA:   3'- agCugCGGuGGC-GGGGCUGGUGa----CAC- -5'
31879 5' -60.8 NC_006938.1 + 18475 0.66 0.493621
Target:  5'- gCGACGaggaCAUCGCCCCGAU--CUGg- -3'
miRNA:   3'- aGCUGCg---GUGGCGGGGCUGguGACac -5'
31879 5' -60.8 NC_006938.1 + 38457 0.66 0.493621
Target:  5'- aCGACGaagagaacguguCCACCGaCUCGAUCGCUGa- -3'
miRNA:   3'- aGCUGC------------GGUGGCgGGGCUGGUGACac -5'
31879 5' -60.8 NC_006938.1 + 51244 0.66 0.493621
Target:  5'- cUCGGCGCuCAUCGCCUucagCGACCAgCUcaaccaggccgGUGg -3'
miRNA:   3'- -AGCUGCG-GUGGCGGG----GCUGGU-GA-----------CAC- -5'
31879 5' -60.8 NC_006938.1 + 21638 0.66 0.493621
Target:  5'- cUUGGCGa-GCCGCUccguCCGACC-CUGUGu -3'
miRNA:   3'- -AGCUGCggUGGCGG----GGCUGGuGACAC- -5'
31879 5' -60.8 NC_006938.1 + 37993 0.66 0.493621
Target:  5'- cCG-CuCCGCCGCCCUGAgacgcgggccaCCAgUGUGg -3'
miRNA:   3'- aGCuGcGGUGGCGGGGCU-----------GGUgACAC- -5'
31879 5' -60.8 NC_006938.1 + 58491 0.66 0.483883
Target:  5'- cUGAUGCCAUacgcaccaGCCCagcaGACCGCcGUGc -3'
miRNA:   3'- aGCUGCGGUGg-------CGGGg---CUGGUGaCAC- -5'
31879 5' -60.8 NC_006938.1 + 34897 0.66 0.474238
Target:  5'- gUCGACaaCACguuCGCCCCGGCCGacCUGg- -3'
miRNA:   3'- -AGCUGcgGUG---GCGGGGCUGGU--GACac -5'
31879 5' -60.8 NC_006938.1 + 59690 0.66 0.471363
Target:  5'- aCGAUGCCACCGCCguugaaggugcuugCCGcgcgcuucugaGCCGCgcgucaauUGUGa -3'
miRNA:   3'- aGCUGCGGUGGCGG--------------GGC-----------UGGUG--------ACAC- -5'
31879 5' -60.8 NC_006938.1 + 16356 0.66 0.455243
Target:  5'- cCGAC-CCAgCGCUCCGgcacgucguGCCACUGg- -3'
miRNA:   3'- aGCUGcGGUgGCGGGGC---------UGGUGACac -5'
31879 5' -60.8 NC_006938.1 + 3862 0.66 0.455243
Target:  5'- gCGAugccacccuUGCCACCGCgCCCGACgaGCgucuugGUGa -3'
miRNA:   3'- aGCU---------GCGGUGGCG-GGGCUGg-UGa-----CAC- -5'
31879 5' -60.8 NC_006938.1 + 9121 0.67 0.445901
Target:  5'- cCGAUGCCACCuCCCau-CCGCaugGUGg -3'
miRNA:   3'- aGCUGCGGUGGcGGGgcuGGUGa--CAC- -5'
31879 5' -60.8 NC_006938.1 + 41374 0.67 0.440348
Target:  5'- gUGGCGCCACCGgCCCGGaaguugauggcggagUUGCUGa- -3'
miRNA:   3'- aGCUGCGGUGGCgGGGCU---------------GGUGACac -5'
31879 5' -60.8 NC_006938.1 + 16030 0.67 0.436667
Target:  5'- aUCGG-GCC-UCGCCCCuGCC-CUGUGa -3'
miRNA:   3'- -AGCUgCGGuGGCGGGGcUGGuGACAC- -5'
31879 5' -60.8 NC_006938.1 + 38709 0.67 0.436667
Target:  5'- cUCGGCGUCuccagGCCGCCUucaucgCGACCAUgcaggGUGu -3'
miRNA:   3'- -AGCUGCGG-----UGGCGGG------GCUGGUGa----CAC- -5'
31879 5' -60.8 NC_006938.1 + 60713 0.68 0.392214
Target:  5'- aCGAUggaGCuCGCCGCCCCGAUgGCg--- -3'
miRNA:   3'- aGCUG---CG-GUGGCGGGGCUGgUGacac -5'
31879 5' -60.8 NC_006938.1 + 46571 0.68 0.392214
Target:  5'- gUCGACcuggaucuuuGCCuuguCUGCCUgGGCCGCUGUc -3'
miRNA:   3'- -AGCUG----------CGGu---GGCGGGgCUGGUGACAc -5'
31879 5' -60.8 NC_006938.1 + 62561 0.68 0.378624
Target:  5'- gUCGGCgGCCgaggaguuccgucucAUCGUCCCGACCAgUGg- -3'
miRNA:   3'- -AGCUG-CGG---------------UGGCGGGGCUGGUgACac -5'
31879 5' -60.8 NC_006938.1 + 15015 0.68 0.366995
Target:  5'- aUGGCGCCACC--UCCGGCCACUu-- -3'
miRNA:   3'- aGCUGCGGUGGcgGGGCUGGUGAcac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.